Gene
| Gene Model ID | pfu_aug1.0_30880.1_12034 |
|---|---|
| Locus | scaffold30880.1 : 359 ... 4525 : - |
| To GenomeBrowser | scaffold30880.1:359..4525 |
| Genes list of scaffold | scaffold30880.1 |
| Synonym | pfu_aug2.0_707.1_24329 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_30880.1_12034.t1 | 6 | 1 | LRR_4 | 45 | 54 | 1.7e-18 | 65.8 | 0.12 | 240.0 | 1.4 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 1 | LRR_1 | 45 | 54 | 9.9e-13 | 46.2 | 0.017 | 37.0 | 4.9 |
| pfu_aug1.0_30880.1_12034.t1 | 5 | 1 | LRR_8 | 45 | 55 | 1.5e-10 | 40.6 | 0.1 | 220.0 | 1.7 |
| pfu_aug1.0_30880.1_12034.t1 | 7 | 1 | LRR_7 | 45 | 55 | 5.0e-09 | 34.9 | 0.065 | 140.0 | 3.4 |
| pfu_aug1.0_30880.1_12034.t1 | 7 | 2 | LRR_7 | 76 | 90 | 5.0e-09 | 34.9 | 0.012 | 26.0 | 5.6 |
| pfu_aug1.0_30880.1_12034.t1 | 6 | 2 | LRR_4 | 77 | 113 | 1.7e-18 | 65.8 | 0.00014 | 0.29 | 10.7 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 2 | LRR_1 | 77 | 92 | 9.9e-13 | 46.2 | 0.0021 | 4.5 | 7.6 |
| pfu_aug1.0_30880.1_12034.t1 | 5 | 2 | LRR_8 | 78 | 135 | 1.5e-10 | 40.6 | 0.0057 | 12.0 | 5.7 |
| pfu_aug1.0_30880.1_12034.t1 | 7 | 3 | LRR_7 | 102 | 113 | 5.0e-09 | 34.9 | 0.79 | 1700.0 | 0.1 |
| pfu_aug1.0_30880.1_12034.t1 | 6 | 3 | LRR_4 | 103 | 136 | 1.7e-18 | 65.8 | 0.0029 | 6.2 | 6.5 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 3 | LRR_1 | 103 | 114 | 9.9e-13 | 46.2 | 0.43 | 920.0 | 0.6 |
| pfu_aug1.0_30880.1_12034.t1 | 7 | 4 | LRR_7 | 127 | 136 | 5.0e-09 | 34.9 | 0.14 | 300.0 | 2.4 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 4 | LRR_1 | 128 | 135 | 9.9e-13 | 46.2 | 0.38 | 800.0 | 0.8 |
| pfu_aug1.0_30880.1_12034.t1 | 6 | 4 | LRR_4 | 191 | 218 | 1.7e-18 | 65.8 | 0.039 | 83.0 | 2.9 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 5 | LRR_1 | 191 | 206 | 9.9e-13 | 46.2 | 0.086 | 180.0 | 2.7 |
| pfu_aug1.0_30880.1_12034.t1 | 5 | 3 | LRR_8 | 191 | 200 | 1.5e-10 | 40.6 | 0.63 | 1300.0 | -0.9 |
| pfu_aug1.0_30880.1_12034.t1 | 5 | 4 | LRR_8 | 243 | 301 | 1.5e-10 | 40.6 | 3.2e-06 | 0.0068 | 16.1 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 6 | LRR_1 | 262 | 277 | 9.9e-13 | 46.2 | 0.083 | 180.0 | 2.8 |
| pfu_aug1.0_30880.1_12034.t1 | 7 | 5 | LRR_7 | 262 | 273 | 5.0e-09 | 34.9 | 0.63 | 1300.0 | 0.4 |
| pfu_aug1.0_30880.1_12034.t1 | 6 | 5 | LRR_4 | 263 | 304 | 1.7e-18 | 65.8 | 1.2e-08 | 2.5e-05 | 23.7 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 7 | LRR_1 | 290 | 309 | 9.9e-13 | 46.2 | 4.1e-05 | 0.087 | 12.9 |
| pfu_aug1.0_30880.1_12034.t1 | 5 | 5 | LRR_8 | 290 | 348 | 1.5e-10 | 40.6 | 8.3e-12 | 1.7e-08 | 34.0 |
| pfu_aug1.0_30880.1_12034.t1 | 7 | 6 | LRR_7 | 290 | 304 | 5.0e-09 | 34.9 | 9.5e-05 | 0.2 | 11.9 |
| pfu_aug1.0_30880.1_12034.t1 | 7 | 7 | LRR_7 | 314 | 330 | 5.0e-09 | 34.9 | 0.0006 | 1.3 | 9.5 |
| pfu_aug1.0_30880.1_12034.t1 | 6 | 6 | LRR_4 | 315 | 353 | 1.7e-18 | 65.8 | 3.4e-09 | 7.2e-06 | 25.5 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 8 | LRR_1 | 315 | 333 | 9.9e-13 | 46.2 | 3.6e-05 | 0.077 | 13.0 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 9 | LRR_1 | 342 | 353 | 9.9e-13 | 46.2 | 0.11 | 230.0 | 2.5 |
| pfu_aug1.0_30880.1_12034.t1 | 10 | 10 | LRR_1 | 367 | 377 | 9.9e-13 | 46.2 | 0.76 | 1600.0 | -0.1 |
Transcript
| Transcript ID | pfu_aug1.0_30880.1_12034.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30880.1_12034.t1 atggtttacgcgccaattggtgatggttttcttcgacccttccgacatctcaaaagattaaaagtggacctaagctatca ttttgacatcatgaaagccttgaaagtgttgcacggtgtacgtcatatggatttagatgtcttggacctcagtggaaaca actggaacattatgagacatgttcatcttacaaaagaagacgtcgataacttacttactatgtgtgtaacagagctcaat ttgttcaataatagaataagttattttcccttctctaaatcattgggtagtccattctttagatgcctggaaaaacttaa catggcttctaatacaatagtctggacatattttgaggcgtttaaccttgtgtactttccaaagctacgatatttggatc tagcatcaatatcatatagaccccttgaaaattatcctagtgatttttcacagactcctgatgatatacttcagcataat ctcggtgatatttctggcaaaaatgtataccctgattttctgcaacgcgtcaacctaacagtgaaaggacctttgccgct agaatacatgtatttagacatttctggaaccagtcttagaaaagaagtgattcttcctttgctgtataagttaaacttcc cgaaccttacgacagtaaaagccccaagtacatattttgctctatgtgaatacaatgtagagtttgaaacaagtttatcc ttcttcgacatgtcaggatggcagtgtaggaagatcaaaccaaaattcatacaaagacacatacacttaactcatcttta catggccaactccaatataggacattacatcaacactaatcaggatcctttgatcagaggactacgaaagttaaaagttt tagatctttctggcaatggcattgaaacccttttgagtgatttctttgaagaccaaaaacattccttgaagattctttat ctgagagacaacaagcttcagaccattccttcagcattggcacctcttcgtcaaattcatctggttgacctaagaaataa ttatttcacgtatttcgacgaaatggaaagagaattacttgacatgtttgaaaatactacattcgacttcaacggaaacc gattttcatatgtgaaaaatacaacttaa |
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Protein
| Protein ID | pfu_aug1.0_30880.1_12034.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_30880.1_12034.t1 MVYAPIGDGFLRPFRHLKRLKVDLSYHFDIMKALKVLHGVRHMDLDVLDLSGNNWNIMRHVHLTKEDVDNLLTMCVTELN LFNNRISYFPFSKSLGSPFFRCLEKLNMASNTIVWTYFEAFNLVYFPKLRYLDLASISYRPLENYPSDFSQTPDDILQHN LGDISGKNVYPDFLQRVNLTVKGPLPLEYMYLDISGTSLRKEVILPLLYKLNFPNLTTVKAPSTYFALCEYNVEFETSLS FFDMSGWQCRKIKPKFIQRHIHLTHLYMANSNIGHYINTNQDPLIRGLRKLKVLDLSGNGIETLLSDFFEDQKHSLKILY LRDNKLQTIPSALAPLRQIHLVDLRNNYFTYFDEMERELLDMFENTTFDFNGNRFSYVKNTT |
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