Gene
| Gene Model ID | pfu_aug1.0_3094.1_30340 |
|---|---|
| Locus | scaffold3094.1 : 62485 ... 66385 : - |
| To GenomeBrowser | scaffold3094.1:62485..66385 |
| Genes list of scaffold | scaffold3094.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3094.1_30340.t1 | 2 | 1 | Sec20 | 39 | 43 | 2.7e-23 | 81.4 | 0.85 | 1300.0 | -0.9 |
| pfu_aug1.0_3094.1_30340.t1 | 2 | 2 | Sec20 | 134 | 224 | 2.7e-23 | 81.4 | 1.8e-26 | 2.7e-23 | 81.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3094.1_30340.t1 | gi|291223881|ref|XP_002731936.1| | PREDICTED: vesicle transport protein SEC20-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3094.1_30340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3094.1_30340.t1 atggcaacagaggatattcaagtacgactttgcctccaagaaatagtgaaacttgatttagaaatcaaagcattgatcca ggacatccaagagtgtgcgactacatcagagattttggaggacattaatgctgatgcccaggctaaagtgtccaagctcc gacataaaattcaggatttagaacagttaggtagggagcaggagaaaggcagcgtacgtcaaatcatacagaaggatgta gacagtcacagacagcgtctcacaaacacgatatctactctacggcaaactaatcttgccacacaattcgccattgataa atcagagaaagagcaattactaaatggaggatcatcggtcaggcagagaagattgcagacaaaggagtctatatccaaaa cggcaacagatattactcaaagcctcatgggattgaatcgtaagctagcggaacaggtggttcagagtgaagataccaaa gctactcttatgagatcatcagatacaatcaccacaacacacgatgaactcagaaacatgactggtcatattgctaactc aaaaaaacttttgtcaaagtatggacgcagacaaattactgataaacttcttatatttttggctcttgtatttttctttg cctctgttttgtatattgttaagaaaagggtatggtga |
|
Protein
| Protein ID | pfu_aug1.0_3094.1_30340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3094.1_30340.t1 MATEDIQVRLCLQEIVKLDLEIKALIQDIQECATTSEILEDINADAQAKVSKLRHKIQDLEQLGREQEKGSVRQIIQKDV DSHRQRLTNTISTLRQTNLATQFAIDKSEKEQLLNGGSSVRQRRLQTKESISKTATDITQSLMGLNRKLAEQVVQSEDTK ATLMRSSDTITTTHDELRNMTGHIANSKKLLSKYGRRQITDKLLIFLALVFFFASVLYIVKKRVW |
|