Gene
| Gene Model ID | pfu_aug1.0_3120.1_51891 |
|---|---|
| Locus | scaffold3120.1 : 82226 ... 86469 : + |
| To GenomeBrowser | scaffold3120.1:82226..86469 |
| Genes list of scaffold | scaffold3120.1 |
| Synonym | pfu_aug2.0_35.1_16759 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | actin |
| Description | BLASTP best hit to NCBI Accession ACD99707 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3120.1_51891.t1 | 1 | 1 | Actin | 4 | 376 | 0.0 | 535.6 | 0.0 | 0.0 | 535.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3120.1_51891.t1 | gi|341579620|gb|AEK81538.1| | beta-actin [Meretrix meretrix] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 5 |
| egg-4cell | 3 |
| 8-16cell | 2 |
| egg-Dshape | 2 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 3 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3120.1_51891.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3120.1_51891.t1 atggcagacgaagacgttgcagctttagttattgacaatggatcgggtatgtgcaaggctgggttcgcaggagacgatgc ccctcgcgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccccattgaacacggcattgtcacaaactgg gacgatatggagaagatttggcatcataccttctacaatgaactccgtgtggcccccgaggaacaccctgttctcctgac tgaggcgccactcaacccaaaggcaaacagagaaaagatgacacagatcatgtttgaaaccttcaactctcctgccatgt acgtagctatccaggccgtattgtcactgtacgcttccggtcgtactacaggtatcgtactggactctggggatggggta tcacacacagtacctatctacgagggatacgccctcccccacgccatcatgaggttagatcttgctggacgtgacctcac agattaccttatgaagatcctaacagagcgtggctactcattcaccaccacagctgagagagaaatcgtcagagacatta aagaaaaattgaattatgttgccttagactttgaacaagaaatgcaaacggctgcatcatcatcatctctagagaagagt tacgaacttcccgacggtcaggtcatcactattggtaacgaaaggttcagggcccccgaggccatgttccagccatcttt cctcggtatggaatcttcgggtatacatgaaacaacatacaacagtataatgaaatgtgacgtagacattcgtaaagact tgtacgcaaataccgttttatctggtggttctaccatgtacccaggtattgctgaccgtatgcagaaagaaatcacagct cttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaatactcggtgtggattggtggatctatcct cgcttctctctccaccttccagcagatgtggatcagcaaacaggagtacgacgagtccggcccatcaatcgtccacagga agtgcttctag |
|
Protein
| Protein ID | pfu_aug1.0_3120.1_51891.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3120.1_51891.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV SHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLNYVALDFEQEMQTAASSSSLEKS YELPDGQVITIGNERFRAPEAMFQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITA LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
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