Gene
Gene Model ID | pfu_aug1.0_3120.1_51892 |
---|---|
Locus | scaffold3120.1 : 88586 ... 96031 : + |
To GenomeBrowser | scaffold3120.1:88586..96031 |
Genes list of scaffold | scaffold3120.1 |
Synonym | pfu_aug2.0_35.1_16758 |
Manual annotation
Study field | structural proteins |
---|---|
Gene name | actin |
Description | Actin full sequence. BLASTP top hit to ACD99707(Meretrix meretrix). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3120.1_51892.t1 | 1 | 1 | Actin | 4 | 376 | 0.0 | 541.5 | 0.0 | 0.0 | 541.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 2 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_3120.1_51892.t1 |
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Definition | - |
>pfu_aug1.0_3120.1_51892.t1 atggcagacgaagacgttgcagctttagttattgacaatggatctggtatgtgcaaggctgggttcgcaggagacgatgc tcctcgtgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcccaaagtaagagaggtatcctcaccctcaaataccccattgagcacggaattgtcacaaactgg gacgatatggagaagatctggcatcataccttctacaatgaactccgtgtggcccccgaagaacaccctgttctcctgac tgaagctcctctcaacccaaaggccaacagagaaaagatgacacagatcatgtttgaaaccttcaactctcctgccatgt acgtagctatccaggccgtattgtcactgtacgcttccggtcgtactacaggtatcgtactggactctggggatggggta tcacatacagtacctatctacgagggatacgcccttccccacgccatcatgaggttagatcttgccggacgtgacctcac agattaccttatgaagatcctcacagagcgtgggtactcgttcaccaccacagctgagagagaaatcgtcagagacatta aagaaaaactatgttatgttgcattggactttgatcaagaaatgcaaacagcttcatcgtcatcatctctagagaagagc tatgaacttcctgacggtcaggtcatcaccattggtaacgaaaggttcagatgtcccgaggccatgttccagccatcttt cctcggtatggaatcaacaggaattcacgagaccacgtacaacagtatcatgaaatgtgacgtagacattcgtaaagact tgtacgcaaataccgttttatctggtggttctaccatgtacccaggtatcgctgaccgtatgcagaaagaaatatccgct cttgctccatcaacgatgaaaattaagatcatagctccaccagagaggaaatactccgtgtggataggtggatctatcct tgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgacgagtctggtccatcaatcgtccacagga agtgcttctaa |
Protein
Protein ID | pfu_aug1.0_3120.1_51892.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3120.1_51892.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV SHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFDQEMQTASSSSSLEKS YELPDGQVITIGNERFRCPEAMFQPSFLGMESTGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISA LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |