Gene
| Gene Model ID | pfu_aug1.0_3120.1_51894 |
|---|---|
| Locus | scaffold3120.1 : 106686 ... 108717 : + |
| To GenomeBrowser | scaffold3120.1:106686..108717 |
| Genes list of scaffold | scaffold3120.1 |
| Synonym | pfu_aug2.0_35.1_16756 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | actin |
| Description | Actin full sequence. BLASTP top hit to AM236595(Haliotis tuberculata). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3120.1_51894.t1 | 1 | 1 | Actin | 4 | 376 | 0.0 | 538.6 | 0.0 | 0.0 | 538.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3120.1_51894.t1 | gi|90185696|emb|CAJ85786.1| | actin [Haliotis tuberculata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 2 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3120.1_51894.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3120.1_51894.t1 atggcagacgaagacgttgcagctttagttattgacaatggatctggtatgtgcaaggctgggttcgcaggagacgatgc ccctcgtgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcacagagtaagagaggtatcctcaccctcaaataccccattgaacacggtattgtcacaaactgg gacgatatggagaagatctggcatcataccttctacaatgaactccgtgtggcccccgaagaacaccctgttctcctgac tgaggctccactcaacccaaaggcaaacagagagaagatgacacagatcatgtttgaaaccttcaactgtcccgccatgt acgtagctatccaggccgtactgtcactgtatgcttccggtcgtacaacaggtatcgtgctggactctggggatggggta tcacatacagtacctatctacgagggatacgcccttcctcacgccattttgaggttagatcttgccggacgtgatctcac agattaccttatgaagatcctcacagagcgtgggtactcattcaccaccacagctgagagagaaatcgtcagagacatca aagaaaaattggcctatgttgccctagactttgaacaagaaatggctaccgccgcatcatcatcatctctagagaagagt tacgaacttcccgacggccaggtcatcaccattggtaacgaaaggttcagaacccccgaagccatgttccagccatcttt cctaggtatggaatctgcaggtatccatgaaacaacatacaacagtataatgaagtgtgacgtagacattcgtaaagact tatatgcaaataccgtactttctggtggtaccactatgtttccgggaattgctgaccgtatgcagaaagaaattacagcc cttgcaccgcagacgatgaaaatcaagatcatagctccaccagagaggaaatactccgtgtggatcggtggatctatcct tgcttctctctccaccttccaacagatgtggatcagcaaacaagaatacgacgagtctggtccatccatcgtccacagga agtgcttctaa |
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Protein
| Protein ID | pfu_aug1.0_3120.1_51894.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3120.1_51894.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGV SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSSLEKS YELPDGQVITIGNERFRTPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITA LAPQTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
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