Gene
Gene Model ID | pfu_aug1.0_3120.1_51894 |
---|---|
Locus | scaffold3120.1 : 106686 ... 108717 : + |
To GenomeBrowser | scaffold3120.1:106686..108717 |
Genes list of scaffold | scaffold3120.1 |
Synonym | pfu_aug2.0_35.1_16756 |
Manual annotation
Study field | structural proteins |
---|---|
Gene name | actin |
Description | Actin full sequence. BLASTP top hit to AM236595(Haliotis tuberculata). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3120.1_51894.t1 | 1 | 1 | Actin | 4 | 376 | 0.0 | 538.6 | 0.0 | 0.0 | 538.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3120.1_51894.t1 | gi|90185696|emb|CAJ85786.1| | actin [Haliotis tuberculata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 2 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_3120.1_51894.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3120.1_51894.t1 atggcagacgaagacgttgcagctttagttattgacaatggatctggtatgtgcaaggctgggttcgcaggagacgatgc ccctcgtgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcacagagtaagagaggtatcctcaccctcaaataccccattgaacacggtattgtcacaaactgg gacgatatggagaagatctggcatcataccttctacaatgaactccgtgtggcccccgaagaacaccctgttctcctgac tgaggctccactcaacccaaaggcaaacagagagaagatgacacagatcatgtttgaaaccttcaactgtcccgccatgt acgtagctatccaggccgtactgtcactgtatgcttccggtcgtacaacaggtatcgtgctggactctggggatggggta tcacatacagtacctatctacgagggatacgcccttcctcacgccattttgaggttagatcttgccggacgtgatctcac agattaccttatgaagatcctcacagagcgtgggtactcattcaccaccacagctgagagagaaatcgtcagagacatca aagaaaaattggcctatgttgccctagactttgaacaagaaatggctaccgccgcatcatcatcatctctagagaagagt tacgaacttcccgacggccaggtcatcaccattggtaacgaaaggttcagaacccccgaagccatgttccagccatcttt cctaggtatggaatctgcaggtatccatgaaacaacatacaacagtataatgaagtgtgacgtagacattcgtaaagact tatatgcaaataccgtactttctggtggtaccactatgtttccgggaattgctgaccgtatgcagaaagaaattacagcc cttgcaccgcagacgatgaaaatcaagatcatagctccaccagagaggaaatactccgtgtggatcggtggatctatcct tgcttctctctccaccttccaacagatgtggatcagcaaacaagaatacgacgagtctggtccatccatcgtccacagga agtgcttctaa |
Protein
Protein ID | pfu_aug1.0_3120.1_51894.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3120.1_51894.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGV SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSSLEKS YELPDGQVITIGNERFRTPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITA LAPQTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |