Gene
| Gene Model ID | pfu_aug1.0_3120.1_51896 |
|---|---|
| Locus | scaffold3120.1 : 113146 ... 121434 : + |
| To GenomeBrowser | scaffold3120.1:113146..121434 |
| Genes list of scaffold | scaffold3120.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | actin |
| Description | Actin full sequence. BLASTP top hit to M26501(Pisaster ochraceus). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3120.1_51896.t1 | 1 | 1 | Actin | 4 | 376 | 0.0 | 537.1 | 0.0 | 0.0 | 536.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3120.1_51896.t1 | gi|113273|sp|P12716.1|ACTC_PISOC | Actin, cytoplasmic | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3120.1_51896.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3120.1_51896.t1 atggcagacgaagatgttgcagctttagttattgacaatggatctggtatgtgtaaggctgggttcgcaggagacgatgc ccctcgtgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccccattgagcacggtattgtcacaaactgg gacgatatggagaagatctggcatcataccttctacaatgaactccgtgtggcccccgaggaacaccctgttctcctgac tgaggctccactcaacccaaaggcaaacagagaaaagatgacacagatcatgtttgaaactttcaactctcctgccatgt acgtagctatccaggccgtattgtcactgtacgcttccggtcgtactacaggtatcgtacttgattctggggatggggta tcacacacagtacctatctacgagggatacgcccttccccacgccatcatgagattagatcttgctggacgtgacctcac agattaccttatgaagatcctcacagagcgtggctactcattcaccaccacagctgagagagaaatcgtcagagacatta aagaaaaattgaattatgttgctctggactttgaacaagaaatgcaaacggctgcatcatcatcttctctagagaagagt tacgaacttcccgacggtcaggtcatcaccattggaaacgaaagattcagatgtcccgaggccatgtttcagccatcttt cctcggtatggaatctgctggtttgcatgaaacaacatacaacagtataatgaagtgtgacgtagacattcgtaaagact tgtacgcaaataccgttttatctggtggttctaccatgtttccaggtattgctgaccgtatgcagaaagaagtcactgcg ttagcaccgcctacaatgaaaatcaagatcatagctccaccagagaggaaatactcggtgtggattggtggatctatcct cgcttctctctccaccttccagcagatgtggatcagcaagcaggaatacgacgagtccggtccatccatcgtccacagga agtgcttctaa |
|
Protein
| Protein ID | pfu_aug1.0_3120.1_51896.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3120.1_51896.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV SHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLNYVALDFEQEMQTAASSSSLEKS YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGLHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVTA LAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
|