Gene
| Gene Model ID | pfu_aug1.0_31288.1_48021 |
|---|---|
| Locus | scaffold31288.1 : 1 ... 7046 : + |
| To GenomeBrowser | scaffold31288.1:1..7046 |
| Genes list of scaffold | scaffold31288.1 |
| Synonym | pfu_aug2.0_3625.1_19155 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_31288.1_48021.t1 | 3 | 1 | LRR_6 | 3 | 24 | 2.7e-11 | 42.2 | 0.0048 | 12.0 | 6.3 |
| pfu_aug1.0_31288.1_48021.t1 | 2 | 1 | LRR_4 | 3 | 44 | 3.8e-06 | 26.3 | 0.0011 | 2.8 | 7.6 |
| pfu_aug1.0_31288.1_48021.t1 | 3 | 1 | LRR_1 | 5 | 11 | 7.3e-06 | 25.3 | 0.43 | 1100.0 | 0.4 |
| pfu_aug1.0_31288.1_48021.t1 | 3 | 2 | LRR_6 | 30 | 52 | 2.7e-11 | 42.2 | 7.2e-05 | 0.18 | 11.9 |
| pfu_aug1.0_31288.1_48021.t1 | 3 | 2 | LRR_1 | 33 | 46 | 7.3e-06 | 25.3 | 0.00041 | 1.0 | 9.6 |
| pfu_aug1.0_31288.1_48021.t1 | 2 | 2 | LRR_4 | 35 | 73 | 3.8e-06 | 26.3 | 5.3e-09 | 1.3e-05 | 24.6 |
| pfu_aug1.0_31288.1_48021.t1 | 3 | 3 | LRR_6 | 59 | 80 | 2.7e-11 | 42.2 | 1.1e-07 | 0.00027 | 20.6 |
| pfu_aug1.0_31288.1_48021.t1 | 3 | 3 | LRR_1 | 61 | 73 | 7.3e-06 | 25.3 | 5.0e-05 | 0.12 | 12.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_31288.1_48021.t1 | gi|260841272|ref|XP_002613852.1| | hypothetical protein BRAFLDRAFT_277514 [Branchiostoma floridae] | 3.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 1 |
| egg-Dshape | 2 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_31288.1_48021.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31288.1_48021.t1 gtgagtacaacgctggaagagttacatctacagaagtacgacatgagagatttcggtgctagcaggctggcagaaaacct gatggacaacaatactctactgtaccttaacttaagctgcaatagagtaacaagagatggaatgtttgaactggcaaagg tcctaaaaaacaatacggccctgaaggtcctggatttaagttacaacagactggaagatgacggggcctgccatgtagcc gaggccctggccacatataacacaaatctggaaac |
|
Protein
| Protein ID | pfu_aug1.0_31288.1_48021.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31288.1_48021.t1 VSTTLEELHLQKYDMRDFGASRLAENLMDNNTLLYLNLSCNRVTRDGMFELAKVLKNNTALKVLDLSYNRLEDDGACHVA EALATYNTNLE |
|