Gene
| Gene Model ID | pfu_aug1.0_3129.1_51902 |
|---|---|
| Locus | scaffold3129.1 : 49956 ... 52427 : + |
| To GenomeBrowser | scaffold3129.1:49956..52427 |
| Genes list of scaffold | scaffold3129.1 |
| Synonym | pfu_aug2.0_1707.1_25101 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3129.1_51902.t1 | 1 | 1 | DAN | 83 | 187 | 1.4e-33 | 114.9 | 3.7e-37 | 1.8e-33 | 114.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3129.1_51902.t1 | gi|260818591|ref|XP_002604466.1| | hypothetical protein BRAFLDRAFT_220377 [Branchiostoma floridae] | 3.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3129.1_51902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3129.1_51902.t1 atgaagtggtcgagcttggacctcaaactcgccgttgttttcctcataatttggatgttttgcacccaagccgacgccag gcgaggtcggcggagaaaaaaactggaggagggatttgggatatttaaaagaatgaacagtaaccctgattccgcgcctg cagtcaaaattgacagtgaatttgaacatttacccgaagctttccgtcatgcacggcggaaacgaccgattaaaggaagc aaacgagcatttattgtgacaaagaaacgctatttgcgcaaagaatggtgcaaaacgcaaccttttaaacagattgtacg tgaaccaggatgtattagtaggactattttaaacaatttctgttacgggcagtgcaattccttctttattcctaaaatat ccaaaaatgagattggagacgcttcgtttttatcatgtggcttttgcaaacctagaaaatacgcaaacattcgagtgact cttatttgtcccggaaaaagttacagagtgaaaaggaagaaaattctccgaataaagaaatgccgatgcatggcgcaaaa agtgaacgtatccaggtga |
|
Protein
| Protein ID | pfu_aug1.0_3129.1_51902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3129.1_51902.t1 MKWSSLDLKLAVVFLIIWMFCTQADARRGRRRKKLEEGFGIFKRMNSNPDSAPAVKIDSEFEHLPEAFRHARRKRPIKGS KRAFIVTKKRYLRKEWCKTQPFKQIVREPGCISRTILNNFCYGQCNSFFIPKISKNEIGDASFLSCGFCKPRKYANIRVT LICPGKSYRVKRKKILRIKKCRCMAQKVNVSR |
|