Gene
| Gene Model ID | pfu_aug1.0_31469.1_55389 |
|---|---|
| Locus | scaffold31469.1 : 1 ... 6975 : - |
| To GenomeBrowser | scaffold31469.1:1..6975 |
| Genes list of scaffold | scaffold31469.1 |
| Synonym | pfu_aug2.0_9966.1_22930 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | blast best hit to DDBJ HQ832612 (Litopenaeus vannamei) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_31469.1_55389.t1 | 2 | 1 | EF-hand_4 | 5 | 73 | 1.3e-07 | 31.2 | 2.7e-05 | 0.017 | 14.8 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 1 | EF-hand_1 | 12 | 40 | 3.6e-38 | 125.9 | 2.4e-12 | 1.5e-09 | 36.4 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 1 | EF-hand_6 | 12 | 41 | 3.4e-28 | 94.9 | 1.7e-12 | 1.1e-09 | 37.3 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 1 | EF-hand_7 | 14 | 73 | 3.6e-35 | 119.9 | 3.4e-18 | 2.2e-15 | 56.5 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 1 | EF-hand_5 | 14 | 37 | 5.4e-26 | 88.7 | 1.2e-09 | 7.8e-07 | 28.1 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 1 | EFhand_Ca_insen | 14 | 71 | 8.7e-06 | 25.6 | 0.48 | 310.0 | 1.4 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 1 | EF-hand_8 | 15 | 38 | 1.3e-29 | 101.6 | 0.00011 | 0.074 | 12.6 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 1 | EF-hand_9 | 16 | 75 | 1.1e-12 | 47.6 | 3.5e-11 | 2.3e-08 | 33.8 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 1 | SPARC_Ca_bdg | 16 | 70 | 5.7e-07 | 29.5 | 4.3e-05 | 0.028 | 14.4 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 2 | EF-hand_8 | 25 | 75 | 1.3e-29 | 101.6 | 1.0e-15 | 6.6e-13 | 48.0 |
| pfu_aug1.0_31469.1_55389.t1 | 3 | 1 | UPF0154 | 28 | 57 | 6.7e-06 | 25.6 | 0.00074 | 0.48 | 10.0 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 2 | EF-hand_1 | 48 | 75 | 3.6e-38 | 125.9 | 5.0e-12 | 3.2e-09 | 35.4 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 2 | EF-hand_6 | 49 | 74 | 3.4e-28 | 94.9 | 8.8e-06 | 0.0057 | 16.4 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 2 | EF-hand_5 | 49 | 73 | 5.4e-26 | 88.7 | 2.4e-07 | 0.00015 | 20.9 |
| pfu_aug1.0_31469.1_55389.t1 | 3 | 2 | UPF0154 | 70 | 92 | 6.7e-06 | 25.6 | 0.92 | 600.0 | 0.1 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 2 | SPARC_Ca_bdg | 78 | 139 | 5.7e-07 | 29.5 | 7.6e-05 | 0.049 | 13.6 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 2 | EFhand_Ca_insen | 79 | 112 | 8.7e-06 | 25.6 | 1.5e-07 | 9.7e-05 | 22.2 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 3 | EF-hand_8 | 82 | 105 | 1.3e-29 | 101.6 | 1.1e-05 | 0.007 | 15.9 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 2 | EF-hand_4 | 84 | 140 | 1.3e-07 | 31.2 | 2.6e-05 | 0.016 | 14.8 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 3 | EF-hand_1 | 85 | 113 | 3.6e-38 | 125.9 | 6.8e-13 | 4.4e-10 | 38.1 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 3 | EF-hand_6 | 85 | 114 | 3.4e-28 | 94.9 | 2.3e-12 | 1.5e-09 | 36.9 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 2 | EF-hand_7 | 86 | 140 | 3.6e-35 | 119.9 | 2.9e-20 | 1.8e-17 | 63.1 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 3 | EF-hand_5 | 86 | 110 | 5.4e-26 | 88.7 | 3.1e-10 | 2.0e-07 | 30.0 |
| pfu_aug1.0_31469.1_55389.t1 | 2 | 2 | EF-hand_9 | 89 | 139 | 1.1e-12 | 47.6 | 0.00022 | 0.14 | 12.0 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 4 | EF-hand_8 | 98 | 140 | 1.3e-29 | 101.6 | 1.0e-14 | 6.7e-12 | 44.8 |
| pfu_aug1.0_31469.1_55389.t1 | 3 | 3 | UPF0154 | 101 | 129 | 6.7e-06 | 25.6 | 0.00026 | 0.17 | 11.5 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 4 | EF-hand_1 | 121 | 140 | 3.6e-38 | 125.9 | 2.3e-07 | 0.00015 | 20.8 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 4 | EF-hand_5 | 125 | 139 | 5.4e-26 | 88.7 | 0.00095 | 0.62 | 9.5 |
| pfu_aug1.0_31469.1_55389.t1 | 4 | 4 | EF-hand_6 | 127 | 139 | 3.4e-28 | 94.9 | 0.12 | 74.0 | 3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_31469.1_55389.t1 | gi|339892264|gb|AEK21540.1| | calmodulin B [Litopenaeus vannamei] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_31469.1_55389.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31469.1_55389.t1 atggcagaaaaccttacagaagaacagattggagaatttaaggaggcgttcagcttgtttgacaaggatggtgatggtac aataacaaccaaggagctcggtactgtaatgaggtcactaggacagaacccaaccgaggctgaacttcaggatatgatca acgaggtagacgctgatggaaatgggacaatagatttcccagaattcttaaccatgatggcgaagaaaatgaaggacacc gatacggaagaggaaattcgagaggcgtttagagtgttcgataaagacggcaatggtttcattagtgcagctgaactacg tcacgtgatgacaaatctcggagaaaaactcacggacgaagaggtagaagagatgataaaagaagctgacattgacggtg acggacaagttaattatgaaggcaagttctattaa |
|
Protein
| Protein ID | pfu_aug1.0_31469.1_55389.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31469.1_55389.t1 MAENLTEEQIGEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDT DTEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVEEMIKEADIDGDGQVNYEGKFY |
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