Gene
| Gene Model ID | pfu_aug1.0_316.1_58071 |
|---|---|
| Locus | scaffold316.1 : 53706 ... 70500 : + |
| To GenomeBrowser | scaffold316.1:53706..70500 |
| Genes list of scaffold | scaffold316.1 |
| Synonym | pfu_aug2.0_49.1_30069 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_316.1_58071.t1 | 9 | 1 | Sgf11 | 6 | 17 | 4.0e-10 | 38.8 | 0.032 | 34.0 | 3.8 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 1 | zf-C2HC_2 | 8 | 30 | 0.0 | 304.3 | 3.2e-09 | 3.4e-06 | 26.5 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 1 | zf-C2H2 | 10 | 22 | 1.6e-10 | 40.6 | 0.059 | 63.0 | 4.2 |
| pfu_aug1.0_316.1_58071.t1 | 6 | 1 | Rad50_zn_hook | 10 | 20 | 2.4e-07 | 30.0 | 0.00097 | 1.0 | 8.8 |
| pfu_aug1.0_316.1_58071.t1 | 6 | 2 | Rad50_zn_hook | 66 | 94 | 2.4e-07 | 30.0 | 0.032 | 34.0 | 4.0 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 2 | Sgf11 | 79 | 95 | 4.0e-10 | 38.8 | 0.00017 | 0.18 | 11.1 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 2 | zf-C2HC_2 | 80 | 104 | 0.0 | 304.3 | 5.0e-14 | 5.3e-11 | 41.8 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 2 | zf-C2H2 | 83 | 103 | 1.6e-10 | 40.6 | 3.4e-05 | 0.036 | 14.4 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 3 | zf-C2HC_2 | 178 | 199 | 0.0 | 304.3 | 5.8e-09 | 6.1e-06 | 25.7 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 3 | zf-C2H2 | 180 | 191 | 1.6e-10 | 40.6 | 0.36 | 390.0 | 1.7 |
| pfu_aug1.0_316.1_58071.t1 | 6 | 3 | Rad50_zn_hook | 180 | 190 | 2.4e-07 | 30.0 | 0.057 | 60.0 | 3.2 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 3 | Sgf11 | 246 | 274 | 4.0e-10 | 38.8 | 0.00015 | 0.16 | 11.3 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 4 | zf-C2HC_2 | 247 | 271 | 0.0 | 304.3 | 2.6e-14 | 2.8e-11 | 42.7 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 4 | zf-C2H2 | 250 | 270 | 1.6e-10 | 40.6 | 0.00011 | 0.11 | 12.8 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 4 | Sgf11 | 316 | 340 | 4.0e-10 | 38.8 | 0.053 | 56.0 | 3.1 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 5 | zf-C2HC_2 | 317 | 338 | 0.0 | 304.3 | 1.2e-09 | 1.3e-06 | 27.8 |
| pfu_aug1.0_316.1_58071.t1 | 6 | 4 | Rad50_zn_hook | 319 | 325 | 2.4e-07 | 30.0 | 0.33 | 350.0 | 0.7 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 6 | zf-C2HC_2 | 386 | 410 | 0.0 | 304.3 | 2.0e-12 | 2.1e-09 | 36.7 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 5 | Sgf11 | 386 | 399 | 4.0e-10 | 38.8 | 0.07 | 74.0 | 2.7 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 5 | zf-C2H2 | 389 | 409 | 1.6e-10 | 40.6 | 0.023 | 24.0 | 5.5 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 7 | zf-C2HC_2 | 449 | 471 | 0.0 | 304.3 | 1.5e-10 | 1.6e-07 | 30.7 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 6 | Sgf11 | 449 | 458 | 4.0e-10 | 38.8 | 0.083 | 88.0 | 2.5 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 6 | zf-C2H2 | 451 | 463 | 1.6e-10 | 40.6 | 0.084 | 89.0 | 3.7 |
| pfu_aug1.0_316.1_58071.t1 | 6 | 5 | Rad50_zn_hook | 451 | 462 | 2.4e-07 | 30.0 | 0.0012 | 1.2 | 8.6 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 7 | Sgf11 | 515 | 538 | 4.0e-10 | 38.8 | 0.00023 | 0.25 | 10.7 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 8 | zf-C2HC_2 | 517 | 541 | 0.0 | 304.3 | 6.9e-14 | 7.3e-11 | 41.4 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 7 | zf-C2H2 | 520 | 540 | 1.6e-10 | 40.6 | 0.00048 | 0.51 | 10.7 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 9 | zf-C2HC_2 | 567 | 589 | 0.0 | 304.3 | 4.0e-10 | 4.2e-07 | 29.4 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 8 | Sgf11 | 567 | 576 | 4.0e-10 | 38.8 | 0.26 | 270.0 | 0.9 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 8 | zf-C2H2 | 569 | 581 | 1.6e-10 | 40.6 | 0.066 | 70.0 | 4.0 |
| pfu_aug1.0_316.1_58071.t1 | 6 | 6 | Rad50_zn_hook | 569 | 580 | 2.4e-07 | 30.0 | 0.0015 | 1.6 | 8.2 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 9 | Sgf11 | 638 | 652 | 4.0e-10 | 38.8 | 0.00059 | 0.62 | 9.4 |
| pfu_aug1.0_316.1_58071.t1 | 10 | 10 | zf-C2HC_2 | 639 | 663 | 0.0 | 304.3 | 3.2e-13 | 3.4e-10 | 39.3 |
| pfu_aug1.0_316.1_58071.t1 | 9 | 9 | zf-C2H2 | 642 | 662 | 1.6e-10 | 40.6 | 0.002 | 2.2 | 8.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_316.1_58071.t1 | gi|291222415|ref|XP_002731212.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_316.1_58071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_316.1_58071.t1 atgcctgttccagctaagaaaacggtcgtttgttacatatgtggaagagaatttggctcacagtcagtttctattcacga acctcagtgtctcaaaaaatggcgagctgaaaatgatagattaccaaagggacaacgaagaaaaactccagttaaacctg aaatcttaccgtctattgctggagatggatcagataaggagagatttaatgaggcagcatggcagagtgcgcagtcccag ttattgccttgtcctaactgtggtagaacattcgcccctgatcgtctatcggttcaccagagaagctgtaaaactggaaa acaagttcaaacacttaaaaaggttaccatcggagaaacgccttcatctaacgacagaccacgcactacgacagtttcaa atccaaaaatagtcacacaggaaaactctaacaaggatcaggcaagaccagggatgggagacaaagagggaacattcaca tcaccgaataaaagtccacccaaggccaaagtaccggcaggaccaagctttgttctctgctacatatgtggacagaaatt tgggagcaagtcaatttccatacatgaaccacaatgtctggagaaatggaaaattgagaatgctaaactccctaaaggtc agcgtcgtaaggagcctgtgaaacccaccgttgtatcttctagtggtcgttatgatgtggacgtcatgaacgaagcagct tggcagagtgcccaatcacagctcattccgtgtgatggctgtggacgcacatttgctcctgaccgccttgctgtccatca aagatcctgtaaaggaactggtggacctaagggaaaaggagcctcagcagctgctgcagggcccactggaccagccagga cccagggaactccccctggctctacaaccaaaccaaagaaagaggcagcacctgccaagccgaactttgtgttgtgttat atctgtggtaggaaatatgggtcagcatctatagctgttcatgaacctcagtgcttagagaagtggaaaatagagaatga cagcttacccaagtctcagaggaggccgttacctaaaaaacccgaggtgctaactgctgctggggagtatgacgtagagg ccatgaatgaggcagcctggcagagctctcaggcccagcttataccctgtgatagatgtggacgacgctttgctagtgac agactccctgtacatcagagaagctgtaaaggtgctacagcaggggcagggacaggcgggcctgctaacagtacccctgg atccacctctgataacctaaagcccacacctcgtgataaaagtcctgacaaaggtggtccaaaaactgtggtctgttaca tctgtggtagagagtttggttctaagtcaattagtatacatgagcctcagtgtttggagaaatggaaaaatgaaaacaac aagctccctaaggagagaaggcgacctctacccaagaaaccagagacagggggacaaccacttacaagggaacagatgaa cgaggcagcctgggagaatgcaaaaaatcagctcattccatgtgagaactgtggacgacgatttgctcctgacagactgg acgtacacctgagggtgtgtaagcccaagcccgggcaaggaccacccaaaatggaagagaagtcccaggctccagccccg gcaatgaggagacctcccactatggtgtgttacatttgtggacgtgagtttggtagcaagtcaatatctatacatgagcc tcagtgtcttgagaaatggaagatagagaacagtaagcttcctaaggaacagagacgaccagagcccaagaaacctgaag tccgcaccattggagctaaaggctcctatgatgtagatgccatgaatgaagcagcttatgagagtgccaaggcccagctg ctgaaatgtgagaactgtggacgaacatttgccccggatcgtctgccagtacatcagagaagctgtagacccaagcctcc taaggagtaa |
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Protein
| Protein ID | pfu_aug1.0_316.1_58071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_316.1_58071.t1 MPVPAKKTVVCYICGREFGSQSVSIHEPQCLKKWRAENDRLPKGQRRKTPVKPEILPSIAGDGSDKERFNEAAWQSAQSQ LLPCPNCGRTFAPDRLSVHQRSCKTGKQVQTLKKVTIGETPSSNDRPRTTTVSNPKIVTQENSNKDQARPGMGDKEGTFT SPNKSPPKAKVPAGPSFVLCYICGQKFGSKSISIHEPQCLEKWKIENAKLPKGQRRKEPVKPTVVSSSGRYDVDVMNEAA WQSAQSQLIPCDGCGRTFAPDRLAVHQRSCKGTGGPKGKGASAAAAGPTGPARTQGTPPGSTTKPKKEAAPAKPNFVLCY ICGRKYGSASIAVHEPQCLEKWKIENDSLPKSQRRPLPKKPEVLTAAGEYDVEAMNEAAWQSSQAQLIPCDRCGRRFASD RLPVHQRSCKGATAGAGTGGPANSTPGSTSDNLKPTPRDKSPDKGGPKTVVCYICGREFGSKSISIHEPQCLEKWKNENN KLPKERRRPLPKKPETGGQPLTREQMNEAAWENAKNQLIPCENCGRRFAPDRLDVHLRVCKPKPGQGPPKMEEKSQAPAP AMRRPPTMVCYICGREFGSKSISIHEPQCLEKWKIENSKLPKEQRRPEPKKPEVRTIGAKGSYDVDAMNEAAYESAKAQL LKCENCGRTFAPDRLPVHQRSCRPKPPKE |
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