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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_3174.1_30363
Locus scaffold3174.1 : 20050 ... 32685 : -
To GenomeBrowser scaffold3174.1:20050..32685
Genes list of scaffold scaffold3174.1
Synonym pfu_aug2.0_358.1_27292

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_3174.1_30363.t1 1 1 zf-CCCH 387 412 1.4e-08 34.2 5.4e-12 2.7e-08 33.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_3174.1_30363.t1 gi|332832815|ref|XP_520240.3| PREDICTED: roquin-2 isoform X1 [Pan troglodytes] 0.0

Transcript
Transcript IDpfu_aug1.0_3174.1_30363.t1
Definition-
>pfu_aug1.0_3174.1_30363.t1
atgaaaacgctcgttaacttcaagaaatgtccctttgatcagaatcccattatgaaggatgtagaagagctgccagtaaa
ctatgccttattacagctagtgggcgcagccataccagataacgaggaaacgaaagctctgacaacagcagaaaactcac
agtactaccagtcaactaaacaatgtattgaagaattggctttatacctgaaacctatgtctgagactaattcaaacagt
aactctgtccaagctgtgactactgccccctccataacccaggccagtccaacactgggagccatccttagtcgaccaat
gcagaaaaaactactcactctggtaaactgtcaacttgtagaagaggaaggacgttccagggctgtccgggcagcgagat
cactaggggagagaactgtcacagaactgatattacagcatcagaatcctcagcagttgtctacaaatctatgggcagca
gtgcgagctagagggtgtcagtttctaggtcctgctatgcaagaggaagtactaaaattgatactgttagcattagagga
tggttctcagctgtccagaaaggttctagtgttatttgtggtacagagactagagaaacattatccacaagcgtctaaaa
cagccataggtcatgtggtacaactcttgtacagagcttcatgcttcaaggttacaaagagagaagaagaatcatctctg
atgcaattgaaggaggaatttagaatatatgaagctttgagacgagaacatgattcccagattgtacagatagccatgga
atctggcttgagaattgcccctgaccaatggtcctccttattatatggggacacagcctacaagtcccatatgcagtcaa
tcattgataagcttcagacccctcagtcctttgctcaaagcattaatgaacttgtggtagctctccagagaacagtggat
ccctgtaatctacagttgctcaggccacatctagatttccttgcttctgtggacccaaacccagattccatgtcaccatc
ttgggaacatgttgaggctgtgataaaggcagctaagtttgtcgtgaagggtttagtggagtttgtacagagtaatggcc
agagaaagagtgaagcaccgctggccatgaacatgcgatataaaactagtttatgtcgagatctcttccagaaaggtcac
tgcccaagagggtcaagctgcacatttgcacattctcatgaggaacttgaaaggtatagagcccggatacgtaaagctgg
taaaaatgtagccttatcatgtgtaacagcaaaactgacaccatcagagagggctgaacttgagcatgtcactaaagcta
ctgatgaaaaattagcagctgcccatagcaagtcaactaaatctgggatcgatactgttgcaaatgaaactagggccatt
gttactcctagtgccacgactgtaatgacaacattggccacctccctgtcgaccctcaaactgaccgatacagttacacc
ccctccatctcatgtccatggtagtaatcatggtttgtctataatgacccaggccaccccacaaatgactggtctacagc
atatccataatctaatgcagggtgttacaccaatgcaactgtctggcctaacccagacagttccttcagctgggaatcag
gggattcctgtcattggaggtcagaggatacaacctgtagctggtcaaggcatgaattctgtagcaggtcaagccattca
acctgtggtaggtcaaggaatgcctcctatcaggggtcaaaacatccagcaagttggaggtcaaagcattccatcagttg
gaagtcaaggcataccaagtgttgggggtctaggtataccaggggctcaaggtttaccacaagttggtggtcaaggaatg
gcacatgtagggggtcgggatattcaacttgtagggggtcaaggtatgacacctggaggtaatcagagcatatcccacat
agggaaccagggcatgacacctttagggggtcaaggggttactcctatagggggtcagggtattccacctttagggggtc
aaggtgttactcctatagcgggtcaaggcatgtctgtcattggtcagatgcagcagatgtacggcccagctcagcaggga
ctacaagttggaccacaacaacagcctactccacaaggtgttgtaccccagggattgaataatcctgtcatgatgggaat
gcagcacatgatgtatccaaacatgaattctttcccaatcggtgatggttggtattgttttgggatttcttatgaagatg
atcttactacaaataatcaaaacataatctttaaacatatattttga

Protein
Protein IDpfu_aug1.0_3174.1_30363.t1
Definition-
>pfu_aug1.0_3174.1_30363.t1
MKTLVNFKKCPFDQNPIMKDVEELPVNYALLQLVGAAIPDNEETKALTTAENSQYYQSTKQCIEELALYLKPMSETNSNS
NSVQAVTTAPSITQASPTLGAILSRPMQKKLLTLVNCQLVEEEGRSRAVRAARSLGERTVTELILQHQNPQQLSTNLWAA
VRARGCQFLGPAMQEEVLKLILLALEDGSQLSRKVLVLFVVQRLEKHYPQASKTAIGHVVQLLYRASCFKVTKREEESSL
MQLKEEFRIYEALRREHDSQIVQIAMESGLRIAPDQWSSLLYGDTAYKSHMQSIIDKLQTPQSFAQSINELVVALQRTVD
PCNLQLLRPHLDFLASVDPNPDSMSPSWEHVEAVIKAAKFVVKGLVEFVQSNGQRKSEAPLAMNMRYKTSLCRDLFQKGH
CPRGSSCTFAHSHEELERYRARIRKAGKNVALSCVTAKLTPSERAELEHVTKATDEKLAAAHSKSTKSGIDTVANETRAI
VTPSATTVMTTLATSLSTLKLTDTVTPPPSHVHGSNHGLSIMTQATPQMTGLQHIHNLMQGVTPMQLSGLTQTVPSAGNQ
GIPVIGGQRIQPVAGQGMNSVAGQAIQPVVGQGMPPIRGQNIQQVGGQSIPSVGSQGIPSVGGLGIPGAQGLPQVGGQGM
AHVGGRDIQLVGGQGMTPGGNQSISHIGNQGMTPLGGQGVTPIGGQGIPPLGGQGVTPIAGQGMSVIGQMQQMYGPAQQG
LQVGPQQQPTPQGVVPQGLNNPVMMGMQHMMYPNMNSFPIGDGWYCFGISYEDDLTTNNQNIIFKHIF

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