Gene
Gene Model ID | pfu_aug1.0_3174.1_30363 |
---|---|
Locus | scaffold3174.1 : 20050 ... 32685 : - |
To GenomeBrowser | scaffold3174.1:20050..32685 |
Genes list of scaffold | scaffold3174.1 |
Synonym | pfu_aug2.0_358.1_27292 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3174.1_30363.t1 | 1 | 1 | zf-CCCH | 387 | 412 | 1.4e-08 | 34.2 | 5.4e-12 | 2.7e-08 | 33.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3174.1_30363.t1 | gi|332832815|ref|XP_520240.3| | PREDICTED: roquin-2 isoform X1 [Pan troglodytes] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_3174.1_30363.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3174.1_30363.t1 atgaaaacgctcgttaacttcaagaaatgtccctttgatcagaatcccattatgaaggatgtagaagagctgccagtaaa ctatgccttattacagctagtgggcgcagccataccagataacgaggaaacgaaagctctgacaacagcagaaaactcac agtactaccagtcaactaaacaatgtattgaagaattggctttatacctgaaacctatgtctgagactaattcaaacagt aactctgtccaagctgtgactactgccccctccataacccaggccagtccaacactgggagccatccttagtcgaccaat gcagaaaaaactactcactctggtaaactgtcaacttgtagaagaggaaggacgttccagggctgtccgggcagcgagat cactaggggagagaactgtcacagaactgatattacagcatcagaatcctcagcagttgtctacaaatctatgggcagca gtgcgagctagagggtgtcagtttctaggtcctgctatgcaagaggaagtactaaaattgatactgttagcattagagga tggttctcagctgtccagaaaggttctagtgttatttgtggtacagagactagagaaacattatccacaagcgtctaaaa cagccataggtcatgtggtacaactcttgtacagagcttcatgcttcaaggttacaaagagagaagaagaatcatctctg atgcaattgaaggaggaatttagaatatatgaagctttgagacgagaacatgattcccagattgtacagatagccatgga atctggcttgagaattgcccctgaccaatggtcctccttattatatggggacacagcctacaagtcccatatgcagtcaa tcattgataagcttcagacccctcagtcctttgctcaaagcattaatgaacttgtggtagctctccagagaacagtggat ccctgtaatctacagttgctcaggccacatctagatttccttgcttctgtggacccaaacccagattccatgtcaccatc ttgggaacatgttgaggctgtgataaaggcagctaagtttgtcgtgaagggtttagtggagtttgtacagagtaatggcc agagaaagagtgaagcaccgctggccatgaacatgcgatataaaactagtttatgtcgagatctcttccagaaaggtcac tgcccaagagggtcaagctgcacatttgcacattctcatgaggaacttgaaaggtatagagcccggatacgtaaagctgg taaaaatgtagccttatcatgtgtaacagcaaaactgacaccatcagagagggctgaacttgagcatgtcactaaagcta ctgatgaaaaattagcagctgcccatagcaagtcaactaaatctgggatcgatactgttgcaaatgaaactagggccatt gttactcctagtgccacgactgtaatgacaacattggccacctccctgtcgaccctcaaactgaccgatacagttacacc ccctccatctcatgtccatggtagtaatcatggtttgtctataatgacccaggccaccccacaaatgactggtctacagc atatccataatctaatgcagggtgttacaccaatgcaactgtctggcctaacccagacagttccttcagctgggaatcag gggattcctgtcattggaggtcagaggatacaacctgtagctggtcaaggcatgaattctgtagcaggtcaagccattca acctgtggtaggtcaaggaatgcctcctatcaggggtcaaaacatccagcaagttggaggtcaaagcattccatcagttg gaagtcaaggcataccaagtgttgggggtctaggtataccaggggctcaaggtttaccacaagttggtggtcaaggaatg gcacatgtagggggtcgggatattcaacttgtagggggtcaaggtatgacacctggaggtaatcagagcatatcccacat agggaaccagggcatgacacctttagggggtcaaggggttactcctatagggggtcagggtattccacctttagggggtc aaggtgttactcctatagcgggtcaaggcatgtctgtcattggtcagatgcagcagatgtacggcccagctcagcaggga ctacaagttggaccacaacaacagcctactccacaaggtgttgtaccccagggattgaataatcctgtcatgatgggaat gcagcacatgatgtatccaaacatgaattctttcccaatcggtgatggttggtattgttttgggatttcttatgaagatg atcttactacaaataatcaaaacataatctttaaacatatattttga |
Protein
Protein ID | pfu_aug1.0_3174.1_30363.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3174.1_30363.t1 MKTLVNFKKCPFDQNPIMKDVEELPVNYALLQLVGAAIPDNEETKALTTAENSQYYQSTKQCIEELALYLKPMSETNSNS NSVQAVTTAPSITQASPTLGAILSRPMQKKLLTLVNCQLVEEEGRSRAVRAARSLGERTVTELILQHQNPQQLSTNLWAA VRARGCQFLGPAMQEEVLKLILLALEDGSQLSRKVLVLFVVQRLEKHYPQASKTAIGHVVQLLYRASCFKVTKREEESSL MQLKEEFRIYEALRREHDSQIVQIAMESGLRIAPDQWSSLLYGDTAYKSHMQSIIDKLQTPQSFAQSINELVVALQRTVD PCNLQLLRPHLDFLASVDPNPDSMSPSWEHVEAVIKAAKFVVKGLVEFVQSNGQRKSEAPLAMNMRYKTSLCRDLFQKGH CPRGSSCTFAHSHEELERYRARIRKAGKNVALSCVTAKLTPSERAELEHVTKATDEKLAAAHSKSTKSGIDTVANETRAI VTPSATTVMTTLATSLSTLKLTDTVTPPPSHVHGSNHGLSIMTQATPQMTGLQHIHNLMQGVTPMQLSGLTQTVPSAGNQ GIPVIGGQRIQPVAGQGMNSVAGQAIQPVVGQGMPPIRGQNIQQVGGQSIPSVGSQGIPSVGGLGIPGAQGLPQVGGQGM AHVGGRDIQLVGGQGMTPGGNQSISHIGNQGMTPLGGQGVTPIGGQGIPPLGGQGVTPIAGQGMSVIGQMQQMYGPAQQG LQVGPQQQPTPQGVVPQGLNNPVMMGMQHMMYPNMNSFPIGDGWYCFGISYEDDLTTNNQNIIFKHIF |