Gene
| Gene Model ID | pfu_aug1.0_31798.1_04792 |
|---|---|
| Locus | scaffold31798.1 : 2951 ... 6943 : - |
| To GenomeBrowser | scaffold31798.1:2951..6943 |
| Genes list of scaffold | scaffold31798.1 |
| Synonym | pfu_aug2.0_266.1_20510 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Trh-related2 |
| Description | Best hit to XP_002434755 neuronal pas domain protein, putative [Ixodes scapularis] with 6e-27 by BLASTP search against NCBI nr database. The predicted protein has a single PAS_3 domain. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_31798.1_04792.t1 | 1 | 1 | PAS_3 | 2 | 71 | 1.8e-14 | 53.5 | 1.8e-17 | 6.6e-14 | 51.7 |
| pfu_aug1.0_31798.1_04792.t1 | 1 | 1 | PAS_11 | 5 | 81 | 2.6e-12 | 46.6 | 2.3e-15 | 8.7e-12 | 44.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_31798.1_04792.t1 | gi|242000224|ref|XP_002434755.1| | neuronal pas domain protein, putative [Ixodes scapularis] | 2.0e-24 |
Transcript
| Transcript ID | pfu_aug1.0_31798.1_04792.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31798.1_04792.t1 atggactggtcgtcagaggagctgcccggaaaaacattgtatgacctctgtcatgcaggagatctggtcaaactcagaaa gacacaccaagatctgttgggtaaaggacaagtcctgtctgagtactatcgcttgatgaacagaaacggcgggtacgtgt gggtgcagacttgtgccacgaccctgttcagctccaagacatcagatgttcatactgtattagcaataatctatgttcta agtggtgtggaatacggtggttgtgtgatgaatacaattcagactgtgacaaacaaagacacagagagtaacaaatctga cctcagcatggaggagcatgatatagatgagagtatggataaagaattacttcagacaagtgtcctgagtcctcgaccag acagtgagtctaatggttcgctctctgaccaatcatcttgcctgaaagaaagcgaggacaagttgttgaccaacgatgag gagcttaacaataacttgcttgagcaagacagcgttatccaaaacaatagcaaacaatcacctattgtgttcgacaactc tgtacatgaagaaactactgctgcaatagtagcaaacttggatgaaaaaatcaaagctctgaaaaacgaatataaaaact cgaggaggaagaatgaacgaccaagaaaaaggaagcgcgatagcgatgtagaggacgaagatagtaatgataaatttgtt cagggattgtgttctaaattgtcccatcaagacatagaaaacagctccctgtctatgtcactgtcttataacagtactgt gtctccgcgacttcacagtcacagcaggtgctcgaattctgacactccagaatgtttagatgatgttagccagtccttgg caatgcctgaggacttatcacttaggacagttgacgtccaaccccttacgtcacgagagtcacactccagacatcttcct agtcgcagcacttcatggcatgggacgtctaccacacatgatgactgtggtactccaagttcagtaaaagacttagagga ggttatgaataaacacttacctaatatatcatcagggacagtaaaaactactcagagatctccctcaggagcttccgatc ttgcttcctcacccagaagtcttccccaaagtttacagataaacaagcacaggtcggccattcagtggactgggacatct cctgaaggggagacgctcccagcttctaacttactacgctctctgtacgcaaacagagagtcagtgatacgaactagctc aaggggacactgcttcaatacagactcaaacccactgaacatgttaacaccccctggtggtgagggtttgaaagagcagt taactcttaacataccgcaaataactgtaaataataaaggaacagtattaccttctttcagtggaagtgaacatttagca acagactcttataacataacgcctccgtcatcggtctcccccgacaacaaggtcgggtcaccctttgccatggaggcgac ctttgacccaaactcagtcatatgtaattcttccacctcagccactgtatctagccctattccagtcaaatcacaaacgt tttcactttcccttgggtcctctcctgttaccgagtataactgtggtaagggagggggctatggtaactttagtacctac cctgtgacagactacactcattatttgcataatggtaactctagttctgttgttgtttatgacacaagacaggaggcgtg gtaccccatgtcattcccgtcttag |
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Protein
| Protein ID | pfu_aug1.0_31798.1_04792.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31798.1_04792.t1 MDWSSEELPGKTLYDLCHAGDLVKLRKTHQDLLGKGQVLSEYYRLMNRNGGYVWVQTCATTLFSSKTSDVHTVLAIIYVL SGVEYGGCVMNTIQTVTNKDTESNKSDLSMEEHDIDESMDKELLQTSVLSPRPDSESNGSLSDQSSCLKESEDKLLTNDE ELNNNLLEQDSVIQNNSKQSPIVFDNSVHEETTAAIVANLDEKIKALKNEYKNSRRKNERPRKRKRDSDVEDEDSNDKFV QGLCSKLSHQDIENSSLSMSLSYNSTVSPRLHSHSRCSNSDTPECLDDVSQSLAMPEDLSLRTVDVQPLTSRESHSRHLP SRSTSWHGTSTTHDDCGTPSSVKDLEEVMNKHLPNISSGTVKTTQRSPSGASDLASSPRSLPQSLQINKHRSAIQWTGTS PEGETLPASNLLRSLYANRESVIRTSSRGHCFNTDSNPLNMLTPPGGEGLKEQLTLNIPQITVNNKGTVLPSFSGSEHLA TDSYNITPPSSVSPDNKVGSPFAMEATFDPNSVICNSSTSATVSSPIPVKSQTFSLSLGSSPVTEYNCGKGGGYGNFSTY PVTDYTHYLHNGNSSSVVVYDTRQEAWYPMSFPS |
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