Gene
| Gene Model ID | pfu_aug1.0_3186.1_37529 |
|---|---|
| Locus | scaffold3186.1 : 2410 ... 15035 : - |
| To GenomeBrowser | scaffold3186.1:2410..15035 |
| Genes list of scaffold | scaffold3186.1 |
| Synonym | pfu_aug2.0_952.1_08034 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3186.1_37529.t1 | 1 | 1 | HMG_box | 11 | 79 | 2.2e-18 | 66.2 | 1.4e-21 | 5.0e-18 | 65.1 |
| pfu_aug1.0_3186.1_37529.t1 | 1 | 1 | HMG_box_2 | 12 | 78 | 3.2e-09 | 37.0 | 2.0e-12 | 7.6e-09 | 35.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3186.1_37529.t1 | gi|268053977|gb|ACY92475.1| | BBX-like transcription factor [Saccoglossus kowalevskii] | 7.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3186.1_37529.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3186.1_37529.t1 atggatgcctcggaggcagagaagaaggatataagacgtcccatgaatgcctttctgatattttgtaagcggcatcgtgc gatggtccgtgaacgcaatccgaacatggataatcgcagcgtgacccgcattctgggagacttgtgggcacatctcgatg aagtggagaaaaccaagtacacagatctagctaaacagtataaagatgcatttatgaaggcaaatccagactacaaatgg cacaacccagaaaagttgaatggaccaatcatatttgccaaaccacagaccagaccaatcaaaatgaagggagaaaggga tgactcacctgaacaattacttactccagggaaactggcagatccaagtaatatgggcggactgagtcttctactgatgg ccggccaacagacgtcttctagcaaatccagcagtcatgtgacaccggccagttgtagcagcgtacctattgaaaaaact tccaaagccgatgacggaaaggttatcaaaacagaaatggaggaagaagaagaagtttctttgaaatgcgaagaaaagct gactgactatgattttgattccgaagagccttgtactgttggaaaatgccccgacgtgcaaagcgtcggagaggtacaag tatcatcatttttttcaaaggaaaacatgcacttcagaacattttgccattctacaaaaataaaaagtgaaaaatatgac gatgatgatgaagaaaaaccattggtcatcgccatggaaacaaacaatggtagtaaagacaacagtaaaattaccattga aacaaataattggagcaaagatgacagtaaaattgccatggaaacaagtagtggcagcaaagacgagagtaaaactgtaa aggcaaaccctataacatgtggtaaggtagttatggatcacatcatagaccaactttatcacacgtcgaaatttggtagt cctaaacgaagcagcctgcaaacacaagcaggttctttaccctcgatgaatgacagaatcctgagaaattcagcaagtgg gaattttaaggacaggccatcggtcttcgaaaatctagtctgctcaagggaccagttagaaagaaagttacttcaagcga gttccgcaccttatacatccgtatactcagcaccgattgttgaaaaaatggatgaaataattgcagcaggcaaatatggt aaaaacaaaggaagaaaacgttgctactctgagagtgttgtaatgtccaaaagtgatagtctgaaaaatttggaacaaaa ggagataaagatagaagagtgtaagagtttagtagaccaggatgcatttcacaagacctctcgggatttggccagcgagg atcacatggagaatgacgaggatgaccaactcccggtaaggaagtcaaggcggcgtaaccgagggcaacggtaccaggag ctgatcaacgagggtatcatacagccatcaagggacagaatgtccggcaggaaacctgatcaaccctgtaaagaagacaa aaaaaatatcgtgcagatattactttcatctgcaatatctaagttcataattgcgataccaaagcaaatgaagacagaag tgatattgacgatgccacctcacttgaagaacatggaaaaaccgactgggcctgtcacggggagtcgtaaacgtaaggct cggaaacactccattactcgtctcacacccgttacagacaatactacgacaaaatgtacaacagtaccacagactgaggc aatttcatctgtaaaacaggttaaattgagtaatgaagtggggggaaatgcagctcaagaacatttgagaaaagagccga cgcaaatcagatttggagtcaaaacagatggttcggaagcagaaaataatatgcagtgttatgacagaaaagaaacgagt atggcaaatgtcagtacagaaaaaagtatagaaacaatggataaggttgaaaatatgtgtacgggtaaatttccttcggg aaaaattgacgtcgctggaacacaacaggcagatagggatgtccatctacatgtatgtgatgtcatcacaaaagacaaca tgaaaacaaattttgattgtgatgatagcatgttgggagattctgaaaattttaccgattcaggatccaaagtaaattgt tcaacggagtttgataagagcaaagataaggtagacaaagttagaattgacgaagaaatctctactgagcacaattctgg agaagagaaaagccagacgggtaataaatggaatacaaatgcagtagtgaatgagaagaaaccaatgatggaagctttgt cgatttttgattctgcaggagctgtccttaaagactgtgatattaatactgacggaactttaggatcaaccaaagacgat cttgagaaatcagaattaaatggaaactgtgatatcccaatagatgactgtgatgctgaaaattgcaaaaatgagaaaaa ttacaaaaatgacgaaaattgcataaatgacgaaaaacaaattttgctatctgcctctaaagtacaacacgaaaatacgc aaatggaattacaaggatgttccgaatttatagcttcctccaaggaatcagaaggtggagatttgtctagatcttcacaa aatatctgtcatttattagctccctctatgatgactccaggggcaggtaacccaagcacatttcaggaattaactactcc tgcaatatttgaaggggtagataactctagcttatttcaagaatctgtttctccttcgacaaaaattgaagcgggaaata acacaagcgtaatttcagaatgtgcttctccatctgaaatattaagtggagataactctagttcatcacaaaaatatata actccatctgtgaagtttgaaggggcagataactctagctcatcacaagaatatatacatgtaactccatctgagaagtt tgaaggggctgataactcttgctcatcgcaagaattttcttcattttcacgtgcaggaagtcaggggcatggagattcat gtaaaattatttcgcttgatattgcttgttcgcaggcgccacctggtggtgacagtatagtacaaaatgtaccgactact agctatcaattaggatatgtaaattcttaa |
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Protein
| Protein ID | pfu_aug1.0_3186.1_37529.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3186.1_37529.t1 MDASEAEKKDIRRPMNAFLIFCKRHRAMVRERNPNMDNRSVTRILGDLWAHLDEVEKTKYTDLAKQYKDAFMKANPDYKW HNPEKLNGPIIFAKPQTRPIKMKGERDDSPEQLLTPGKLADPSNMGGLSLLLMAGQQTSSSKSSSHVTPASCSSVPIEKT SKADDGKVIKTEMEEEEEVSLKCEEKLTDYDFDSEEPCTVGKCPDVQSVGEVQVSSFFSKENMHFRTFCHSTKIKSEKYD DDDEEKPLVIAMETNNGSKDNSKITIETNNWSKDDSKIAMETSSGSKDESKTVKANPITCGKVVMDHIIDQLYHTSKFGS PKRSSLQTQAGSLPSMNDRILRNSASGNFKDRPSVFENLVCSRDQLERKLLQASSAPYTSVYSAPIVEKMDEIIAAGKYG KNKGRKRCYSESVVMSKSDSLKNLEQKEIKIEECKSLVDQDAFHKTSRDLASEDHMENDEDDQLPVRKSRRRNRGQRYQE LINEGIIQPSRDRMSGRKPDQPCKEDKKNIVQILLSSAISKFIIAIPKQMKTEVILTMPPHLKNMEKPTGPVTGSRKRKA RKHSITRLTPVTDNTTTKCTTVPQTEAISSVKQVKLSNEVGGNAAQEHLRKEPTQIRFGVKTDGSEAENNMQCYDRKETS MANVSTEKSIETMDKVENMCTGKFPSGKIDVAGTQQADRDVHLHVCDVITKDNMKTNFDCDDSMLGDSENFTDSGSKVNC STEFDKSKDKVDKVRIDEEISTEHNSGEEKSQTGNKWNTNAVVNEKKPMMEALSIFDSAGAVLKDCDINTDGTLGSTKDD LEKSELNGNCDIPIDDCDAENCKNEKNYKNDENCINDEKQILLSASKVQHENTQMELQGCSEFIASSKESEGGDLSRSSQ NICHLLAPSMMTPGAGNPSTFQELTTPAIFEGVDNSSLFQESVSPSTKIEAGNNTSVISECASPSEILSGDNSSSSQKYI TPSVKFEGADNSSSSQEYIHVTPSEKFEGADNSCSSQEFSSFSRAGSQGHGDSCKIISLDIACSQAPPGGDSIVQNVPTT SYQLGYVNS |
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