Gene
| Gene Model ID | pfu_aug1.0_31923.1_40847 |
|---|---|
| Locus | scaffold31923.1 : 1 ... 6827 : + |
| To GenomeBrowser | scaffold31923.1:1..6827 |
| Genes list of scaffold | scaffold31923.1 |
| Synonym | pfu_aug2.0_2802.1_08983 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_31923.1_40847.t1 | 1 | 1 | HCaRG | 1 | 58 | 6.5e-12 | 45.3 | 2.0e-15 | 7.4e-12 | 45.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_31923.1_40847.t1 | gi|260799276|ref|XP_002594623.1| | hypothetical protein BRAFLDRAFT_121749 [Branchiostoma floridae] | 7.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 2 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_31923.1_40847.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31923.1_40847.t1 ttagaggacataaactggcgtctcaaccttcaaatggcacaagcaacaaaagccaaaatgaagataccaaatgcaatgtt tgaacttgccataaaagatgaaaatgcagagaaaaaggagaaaattagatttgaaatgacccatgatgaattatactcat tttataatcaatttctggatactcatctgaacaacccgctgttcaacaggtaccctcctgcggacgtaagataa |
|
Protein
| Protein ID | pfu_aug1.0_31923.1_40847.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_31923.1_40847.t1 LEDINWRLNLQMAQATKAKMKIPNAMFELAIKDENAEKKEKIRFEMTHDELYSFYNQFLDTHLNNPLFNRYPPADVR |
|