Gene
| Gene Model ID | pfu_aug1.0_3232.1_37536 |
|---|---|
| Locus | scaffold3232.1 : 1 ... 16105 : + |
| To GenomeBrowser | scaffold3232.1:1..16105 |
| Genes list of scaffold | scaffold3232.1 |
| Synonym | pfu_aug2.0_3502.1_09162 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3232.1_37536.t1 | 2 | 1 | MaoC_dehydrat_N | 38 | 159 | 2.0e-12 | 47.0 | 7.4e-15 | 2.2e-11 | 43.6 |
| pfu_aug1.0_3232.1_37536.t1 | 1 | 1 | MaoC_dehydratas | 187 | 301 | 8.4e-31 | 105.9 | 4.9e-34 | 1.5e-30 | 105.1 |
| pfu_aug1.0_3232.1_37536.t1 | 2 | 2 | MaoC_dehydrat_N | 212 | 234 | 2.0e-12 | 47.0 | 0.13 | 380.0 | 0.8 |
| pfu_aug1.0_3232.1_37536.t1 | 1 | 1 | Alkyl_sulf_C | 329 | 435 | 2.2e-06 | 27.6 | 1.2e-09 | 3.6e-06 | 26.9 |
| pfu_aug1.0_3232.1_37536.t1 | 1 | 1 | SCP2 | 337 | 434 | 3.7e-22 | 78.5 | 2.4e-25 | 7.3e-22 | 77.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3232.1_37536.t1 | gi|224830104|gb|ACN66287.1| | 17 beta hydroxysteroid dehydrogenase 4 [Salmo trutta fario] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3232.1_37536.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3232.1_37536.t1 atctaatacatcgagtccatctgaggggatcctttcagatgtcaaaccaaatcagacatcagggggatcaggaggtgttg atgtggaagcagcaaggagacagaaacccttacccagtacctacacatacacagagagagatgtcatcttatataacctg ggcgtgggatcctctacagaacatgaggaacatcttaagtttttatttgagggatcagatgatttctgtgtcattcccag ttttggagtcattccagcattctccagcatgtctatagcttcaaatgtaccaggactcgatgttgatcccactaagattt tacatggagaacagtacctagaaatatacaagcctttcccagcaagaggtgccacactgaagtcgtatgccaggattgca gatgttcttgataagggatcaggggcagtcatcattgctaatgttgagacctttgatgaacaaaatgagaaggtctgttt caaccagttcagcacatttgtcgtcggggcaggaaagtttggtgggaagaggacttccacggaggctaaacctacaatga atccacctcaacgtcaaccagacgccagtattacagaacagacagggagagatcaggcagccttgtacagacttagtgga gacaggaatcccttacacatagatccaagctttgctgccatgggaggatttgcagagcccattttacatggcttatgcag cttcggttatgcaacaagacatgtattaaaacaatactgtgataatgatgtcacaaagataaaagctataaaggtacgat tttctcgtcctgtattgccgggtcagaacatacggacagacatgtggaaagacggaaacagagtatacttccaatgcaag gttgttgacaatggttatgtaagtctgtccggtgcttatattgacctccatggatctacagattctggacctagtgcagg accagcggtcacatcgttgatgagtgacggattatttgagggaatggctaaaagagcagaatcacaaccagctctggcaa agaaaatcaatgctgtatttgcctttgaaatcacaaaagatggaaaaactgctgctaaatggactgcggacatgaagaca ggtgccggagtttacagaggtgatcctaagggggccaaggcagactgtacattgataatagacgacaaaaatatggtgga tatggcctcgggcaaacttaatggacaacaggcattcatgaagggactattgaagatcaagggtaatatgatgttggcac agaaactgggcgatttactcaaagacaactctaagatgtga |
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Protein
| Protein ID | pfu_aug1.0_3232.1_37536.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3232.1_37536.t1 SNTSSPSEGILSDVKPNQTSGGSGGVDVEAARRQKPLPSTYTYTERDVILYNLGVGSSTEHEEHLKFLFEGSDDFCVIPS FGVIPAFSSMSIASNVPGLDVDPTKILHGEQYLEIYKPFPARGATLKSYARIADVLDKGSGAVIIANVETFDEQNEKVCF NQFSTFVVGAGKFGGKRTSTEAKPTMNPPQRQPDASITEQTGRDQAALYRLSGDRNPLHIDPSFAAMGGFAEPILHGLCS FGYATRHVLKQYCDNDVTKIKAIKVRFSRPVLPGQNIRTDMWKDGNRVYFQCKVVDNGYVSLSGAYIDLHGSTDSGPSAG PAVTSLMSDGLFEGMAKRAESQPALAKKINAVFAFEITKDGKTAAKWTADMKTGAGVYRGDPKGAKADCTLIIDDKNMVD MASGKLNGQQAFMKGLLKIKGNMMLAQKLGDLLKDNSKM |
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