Gene
| Gene Model ID | pfu_aug1.0_3238.1_30374 |
|---|---|
| Locus | scaffold3238.1 : 3346 ... 23565 : + |
| To GenomeBrowser | scaffold3238.1:3346..23565 |
| Genes list of scaffold | scaffold3238.1 |
| Synonym | pfu_aug2.0_133.1_10333 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3238.1_30374.t1 | 1 | 1 | Lipocalin_2 | 11 | 84 | 2.9e-06 | 27.1 | 9.1e-10 | 4.5e-06 | 26.4 |
| pfu_aug1.0_3238.1_30374.t1 | 1 | 1 | Lipocalin | 18 | 81 | 9.9e-09 | 35.3 | 3.6e-12 | 1.8e-08 | 34.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3238.1_30374.t1 | gi|31322782|gb|AAP30079.1| | apolipoprotein D [Branchiostoma belcheri tsingtauense] | 7.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3238.1_30374.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3238.1_30374.t1 atgatcaaacaatcggaaatagtcatgtatcataaaaaagagagagcgccagcttacggagattactgggtattggatac cgactacaaaaactacacagtcatctactcttgcggacctctccttggtttagggaaagtagaattcgcctgggtgctga gtcgccaacggacattggactcggcaactaaagacagactgttcaacatgatgaaaggttacggaatcgatgtcaaccat ttcagtatggaggaccagntattatggagcaacgattgttggtttccaaaatttgagcgtcagatcatttgcagattatt tgagaggatttatgagttttatgtgtgccttctaaagatgagtgcagaaaggttgttcgatacaaaatgacgcagcgaac gttctgtatgcattaaaactgctatgtactgtttgcgtgttccaaatccgcaagcaggctgtaagggacacgtactgata acgcacaatcgccgaacagatacacaaggtttgcctacgtcagtcaatgaactgaaagctcgtcaaaaagttccccgcga ggggtttgacagtattcagcaggggaagttgtccaaacgtacaagtaaaggctga |
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Protein
| Protein ID | pfu_aug1.0_3238.1_30374.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3238.1_30374.t1 MIKQSEIVMYHKKERAPAYGDYWVLDTDYKNYTVIYSCGPLLGLGKVEFAWVLSRQRTLDSATKDRLFNMMKGYGIDVNH FSMEDQXLWSNDCWFPKFERQIICRLFERIYEFYVCLLKMSAERLFDTKXRSERSVCIKTAMYCLRVPNPQAGCKGHVLI THNRRTDTQGLPTSVNELKARQKVPREGFDSIQQGKLSKRTSKG |
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