Gene
| Gene Model ID | pfu_aug1.0_3257.1_08572 |
|---|---|
| Locus | scaffold3257.1 : 30683 ... 44075 : - |
| To GenomeBrowser | scaffold3257.1:30683..44075 |
| Genes list of scaffold | scaffold3257.1 |
| Synonym | pfu_aug2.0_4452.1_09327 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3257.1_08572.t1 | 1 | 1 | zf-RING_2 | 177 | 223 | 2.8e-09 | 36.6 | 1.7e-12 | 2.8e-09 | 36.6 |
| pfu_aug1.0_3257.1_08572.t1 | 2 | 1 | zf-C3HC4_3 | 177 | 227 | 6.6e-08 | 32.1 | 4.0e-11 | 6.6e-08 | 32.1 |
| pfu_aug1.0_3257.1_08572.t1 | 2 | 1 | zf-RING_UBOX | 178 | 220 | 4.0e-09 | 36.0 | 5.0e-12 | 8.2e-09 | 35.0 |
| pfu_aug1.0_3257.1_08572.t1 | 2 | 1 | zf-C3HC4_2 | 178 | 222 | 6.1e-08 | 32.5 | 3.7e-11 | 6.1e-08 | 32.5 |
| pfu_aug1.0_3257.1_08572.t1 | 1 | 1 | zf-C3HC4 | 178 | 222 | 2.5e-07 | 30.2 | 1.5e-10 | 2.5e-07 | 30.2 |
| pfu_aug1.0_3257.1_08572.t1 | 1 | 1 | zf-C3HC4_4 | 178 | 222 | 4.2e-07 | 29.7 | 2.6e-10 | 4.2e-07 | 29.7 |
| pfu_aug1.0_3257.1_08572.t1 | 1 | 1 | zf-RING_5 | 178 | 224 | 4.3e-06 | 26.3 | 2.6e-09 | 4.3e-06 | 26.3 |
| pfu_aug1.0_3257.1_08572.t1 | 2 | 2 | zf-RING_UBOX | 219 | 225 | 4.0e-09 | 36.0 | 0.23 | 380.0 | 0.9 |
| pfu_aug1.0_3257.1_08572.t1 | 2 | 2 | zf-C3HC4_3 | 265 | 295 | 6.6e-08 | 32.1 | 0.4 | 650.0 | 0.1 |
| pfu_aug1.0_3257.1_08572.t1 | 2 | 2 | zf-C3HC4_2 | 282 | 296 | 6.1e-08 | 32.5 | 0.44 | 730.0 | 0.3 |
Transcript
| Transcript ID | pfu_aug1.0_3257.1_08572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3257.1_08572.t1 atgcggaagaaaaggggtcgcaggttggatgcagctttagatctagaacttgatgtcactagagagtttacaggaaaata cttctttgaggaagcacagggacttgcagatggctcaggagctgatttaaagcgcattctgagaatccacatgattggtg aattaacggccattcaaggactttcctcaagtaacggtgtatcatccgataaacgatggcaagaacggtcaagacttcgc gaactttggatggacaggatggataggatcaatcacaggcgtgaagtcgacacttcaaaactaaagcctcgtattaactt tgcacattttatcttcgagagtcgacaattccgtagtgtagaatattcaggggaagtagcatacttttttgatgacaaga acctgagaccagatgcttactggcacccaaaaattgacaatgttgtttatcatgtatttgcaatggcgacagcaacgccc tctcaagatgatagtgaagaaaaatcttcaacaaagagtactcggtacgtctgtcctatttgtctagaatcaatgaagac tcctcgttctcttccttgtctacataccttttgtgaagattgtttacaaacttttattactgctgctaccggtaaaaatc tagatgacatcgcatgtccagtatgtagaaaacaaattatggcacccgaacctggattaccaagggataaatgggcaaaa gcttttccattgaactactatttatctacatatttggttgatcaaaatgcatctgatttaaaaagcgaaatagaaaattg caaagcctgtaagagatcaaacaatttactaacactagctgatcactactgcaaaaattgtggtgaaacaatttgtgatg cttgtaaacaactgcacaagaattttcagattatgagtagtcatgtgattgtaacattagaacatttcaaaaacaatcca tccataccggagaaagatgaaatatgccagcaccatcctggtaaagttgttgaagtgtattgtcttgaccacagtaaaat gtgctgcagtgtttgctttgctacaaagcatcgacattgtaaagatgtgaaatccattgaagaatgtgctgaggatttgt cagaagatgttctcaaagtcatatctacgaggttggaggccttattggaatcagttgaagaagaaataaaagaaaaggta aacattggtgaaaagcggaagaaatgtaaagagcaggttgtagttaagatgacacaatgtatagaagctgctaaaaagaa tcttgacattttactacaacagtttgaatctgacatagataggaaagacatttctgctgagtcaaagttacaaaacattc ttaaaatcttccaaggaatcaaaatatcagtgatcggagacaggcagatgttggagtcagctatcaagtatggttctaag acacaactcttttttgctctagaaaaggtgaaaattcaaatgggtgatcggatgaaacaaatatcagatgttgcaagcgg atccctaacagtaaaatacactgttgatttgaagaaagttgaggaggtttgcaaattgaaaaatatttgcactgttcatt cagcattgtcaaatttatccatgaaaactctaggatcacttggcataatgaaatcgtttatggacgattcggattacctt agaagacaacgcctcattcatttagaacctcacacgattaagtgggttgagaaatggacatacaaactaccttgtcgatg ttttggtgccacattgtttggacagaaagtagcagtagtatcagagaggaagaaaatatttacatttcttatagaagacg gaagagtactatgtgaacatactattccatacatcaaagaaccggctgatatcaattatgcaggcagtgaaaacaaagtg tttgtctcttttaaaggaggaaatattttgaaggaatatcacattgacgacgaaacgatcacagaaataggacaaatttt atttcaaaatattgctgagggatttttaatctttggtgatgagatagtgcatgcttcaaaacactatgtctacatctcta atagggatgggcatttgagaaaatcgattgaatccaagtctagaggagctataggatatattgctggatgttcaaaacaa cgagtgttttgtcacagagatgacactaccgtctgctacagaagaatgaatggagatactgtcggtaaaatatcactgtc acagtctacagaagatcctagaggcctcggcatcgacttccaggggaatgtatatgtctgttgtcacttttcaaagaaac ttttacaaatttctcacaaagaccacagtgtaagagtggcattagatgtggaatgttacgtaattgcatttcatccagat ggcatgtcatttgttctgatagattatagcggcaacatgagatattacactttgtctgagtga |
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Protein
| Protein ID | pfu_aug1.0_3257.1_08572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3257.1_08572.t1 MRKKRGRRLDAALDLELDVTREFTGKYFFEEAQGLADGSGADLKRILRIHMIGELTAIQGLSSSNGVSSDKRWQERSRLR ELWMDRMDRINHRREVDTSKLKPRINFAHFIFESRQFRSVEYSGEVAYFFDDKNLRPDAYWHPKIDNVVYHVFAMATATP SQDDSEEKSSTKSTRYVCPICLESMKTPRSLPCLHTFCEDCLQTFITAATGKNLDDIACPVCRKQIMAPEPGLPRDKWAK AFPLNYYLSTYLVDQNASDLKSEIENCKACKRSNNLLTLADHYCKNCGETICDACKQLHKNFQIMSSHVIVTLEHFKNNP SIPEKDEICQHHPGKVVEVYCLDHSKMCCSVCFATKHRHCKDVKSIEECAEDLSEDVLKVISTRLEALLESVEEEIKEKV NIGEKRKKCKEQVVVKMTQCIEAAKKNLDILLQQFESDIDRKDISAESKLQNILKIFQGIKISVIGDRQMLESAIKYGSK TQLFFALEKVKIQMGDRMKQISDVASGSLTVKYTVDLKKVEEVCKLKNICTVHSALSNLSMKTLGSLGIMKSFMDDSDYL RRQRLIHLEPHTIKWVEKWTYKLPCRCFGATLFGQKVAVVSERKKIFTFLIEDGRVLCEHTIPYIKEPADINYAGSENKV FVSFKGGNILKEYHIDDETITEIGQILFQNIAEGFLIFGDEIVHASKHYVYISNRDGHLRKSIESKSRGAIGYIAGCSKQ RVFCHRDDTTVCYRRMNGDTVGKISLSQSTEDPRGLGIDFQGNVYVCCHFSKKLLQISHKDHSVRVALDVECYVIAFHPD GMSFVLIDYSGNMRYYTLSE |
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