Gene
| Gene Model ID | pfu_aug1.0_327.1_50803 |
|---|---|
| Locus | scaffold327.1 : 69816 ... 98012 : + |
| To GenomeBrowser | scaffold327.1:69816..98012 |
| Genes list of scaffold | scaffold327.1 |
| Synonym | pfu_aug2.0_1433.1_11660 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_327.1_50803.t1 | 1 | 1 | Beta-lactamase | 40 | 276 | 1.4e-31 | 109.7 | 1.5e-35 | 2.3e-31 | 109.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_327.1_50803.t1 | gi|260834328|ref|XP_002612163.1| | hypothetical protein BRAFLDRAFT_88902 [Branchiostoma floridae] | 5.0e-37 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_327.1_50803.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_327.1_50803.t1 atggaacgcaataacttgattatgcatcaacggattttcacgaattttatacattatgattggactgtggagaggaagcc gcctttcgattttcaggttcacccgatttgattagggttatctatagtaaaaaatggagaaacattcgccaaaggttacg gctacagagatgtcaacagtaagaagccgtttgacgcggacacagtctcttgtggtgggtccactgggaaagcatttaca gctgtactcctagcaattctcatgactgaaaaaaataaaaatggccacagagtaaattggaggtcaaacatacaggatat atcaagtggagagatcagatttaaggatgaaacgaggacatctgaagtcacacttcttgaccttctgacccatagaattg gtatggaaacagttgatctactattgatcactggatatcctgacaacattgctaatcgcaaatttatttctaaacgtttg agaaatatgaaaaccatagcgccatttcgggaggagttcatttataacaaccttatgtacatgacggcagggcatgtggc agaaattctgggaggtgcgtcgtttgaggagctgataaggtcccggatatttaaaccactaaatatgactgctgcctcat tcatggcagatcttgactttaatcaaaatgtggccagaccttacgacaaggaaaacgatactttgttggaatctgatacg tatctgtacagggtgcattctctttctcccgctggtactgtgtgtgctagtccacgtgattattcaaaatggctggtgtt tttgctcaacaacgcgacgactatggatggagtgagattgatagaggattcgttatggcgggacatgtggaaggggagac agtatattggagacgccgcggaaacgtcatatagcctgtataagccattcccttacttccggtcagcaagttcgtatgca acggcttggttccgttcgaactacagagaaaagtccgattctaaaaataagcacacagaaaatgatattattcagatgtt gagctatctgatcaacaacattttgtggcgtttggaggaaaggtcttccaacaaagtgtcggtattccaatgggaaccaa ttgtacccaactccttgtcgacattttttgtcccccgctttcgcgaaagcgcggggacattaaaaccggtgaagaagtgt caggaggatgactgctggtactgcacccttaacccaccaaaactgcaagcagatgaagttcattggctgcctgatccaac tctggacgaaaaccgggaggagttcttgccattcgctaccctatttggaaaggagaccacagacaaggatcgaccaagca gtggaggggattcaagtgaggaggacaagaagaaccggtctatccttgttgctggcaaggttagaagcgtcataatatgt ggagaatgcgggaaaaggagggtagtctatgcgaaacaacgcctctcagctgagcagtgcatttgtttagatcgtgtgca agaagaacttgcatacacatgtggaagccatctactaccagagacccataggtttaaggatacactgattgttcggttag gtcttaactgcagctcttccattgaaactacctactactcaacatacgtgacggattactggccttcgcccactctatca gctcatcaagaaaataattgtactcttctgaagacctaccaggaaaatcaacatgctgatgaagtttacgaaatagcagc tttcgggaaaattctagagataaagcccaggttaaagttttgtctacggacgacgacgacaacggccaagaagccgaggg tatggcataagctctccggactttttcgtaccggcgagttaaaagcaaatacggataggcctttacagtaa |
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Protein
| Protein ID | pfu_aug1.0_327.1_50803.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_327.1_50803.t1 MERNNLIMHQRIFTNFIHYDWTVERKPPFDFQVHPIXLGLSIVKNGETFAKGYGYRDVNSKKPFDADTVSCGGSTGKAFT AVLLAILMTEKNKNGHRVNWRSNIQDISSGEIRFKDETRTSEVTLLDLLTHRIGMETVDLLLITGYPDNIANRKFISKRL RNMKTIAPFREEFIYNNLMYMTAGHVAEILGGASFEELIRSRIFKPLNMTAASFMADLDFNQNVARPYDKENDTLLESDT YLYRVHSLSPAGTVCASPRDYSKWLVFLLNNATTMDGVRLIEDSLWRDMWKGRQYIGDAAETSYSLYKPFPYFRSASSYA TAWFRSNYREKSDSKNKHTENDIIQMLSYLINNILWRLEERSSNKVSVFQWEPIVPNSLSTFFVPRFRESAGTLKPVKKC QEDDCWYCTLNPPKLQADEVHWLPDPTLDENREEFLPFATLFGKETTDKDRPSSGGDSSEEDKKNRSILVAGKVRSVIIC GECGKRRVVYAKQRLSAEQCICLDRVQEELAYTCGSHLLPETHRFKDTLIVRLGLNCSSSIETTYYSTYVTDYWPSPTLS AHQENNCTLLKTYQENQHADEVYEIAAFGKILEIKPRLKFCLRTTTTTAKKPRVWHKLSGLFRTGELKANTDRPLQ |
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