Gene
| Gene Model ID | pfu_aug1.0_32749.1_48089 |
|---|---|
| Locus | scaffold32749.1 : 8949 ... 15285 : - |
| To GenomeBrowser | scaffold32749.1:8949..15285 |
| Genes list of scaffold | scaffold32749.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to NCBI AAX26683.2 (Schistosoma japonicum) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_32749.1_48089.t1 | 2 | 1 | EF-hand_8 | 10 | 31 | 8.7e-21 | 73.2 | 3.5e-06 | 0.0052 | 16.3 |
| pfu_aug1.0_32749.1_48089.t1 | 2 | 1 | EF-hand_1 | 14 | 42 | 1.2e-22 | 77.4 | 8.9e-14 | 1.3e-10 | 39.7 |
| pfu_aug1.0_32749.1_48089.t1 | 2 | 1 | EF-hand_6 | 14 | 43 | 4.0e-15 | 54.2 | 2.7e-13 | 4.0e-10 | 38.7 |
| pfu_aug1.0_32749.1_48089.t1 | 1 | 1 | EF-hand_7 | 15 | 75 | 2.3e-21 | 75.6 | 2.0e-24 | 2.9e-21 | 75.3 |
| pfu_aug1.0_32749.1_48089.t1 | 2 | 1 | EF-hand_5 | 15 | 39 | 7.8e-14 | 50.2 | 4.4e-11 | 6.5e-08 | 31.5 |
| pfu_aug1.0_32749.1_48089.t1 | 2 | 2 | EF-hand_8 | 27 | 77 | 8.7e-21 | 73.2 | 4.8e-21 | 7.1e-18 | 63.9 |
| pfu_aug1.0_32749.1_48089.t1 | 2 | 2 | EF-hand_1 | 50 | 77 | 1.2e-22 | 77.4 | 5.6e-13 | 8.2e-10 | 37.2 |
| pfu_aug1.0_32749.1_48089.t1 | 2 | 2 | EF-hand_5 | 54 | 73 | 7.8e-14 | 50.2 | 5.1e-07 | 0.00075 | 18.7 |
| pfu_aug1.0_32749.1_48089.t1 | 2 | 2 | EF-hand_6 | 56 | 76 | 4.0e-15 | 54.2 | 2.4e-05 | 0.036 | 13.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_32749.1_48089.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_32749.1_48089.t1 atgatgtcaaggaaaatgaaagacacagactccgaggaagaacttcgggaagccttcagagttttcgataaagacggaaa cgggtttataagtgctgctgaattacgtcacgtgatgacgaatcttggggaaaaactgacggacgaggaggtcgatgaaa tgatcagggaagcggatattgacggcgacggacaagtcaattacgaagaatttgtaggaatgatgcaaacaaagtaa |
|
Protein
| Protein ID | pfu_aug1.0_32749.1_48089.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_32749.1_48089.t1 MMSRKMKDTDSEEELREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVGMMQTK |
|