Gene
| Gene Model ID | pfu_aug1.0_328.1_36496 |
|---|---|
| Locus | scaffold328.1 : 51431 ... 64375 : - |
| To GenomeBrowser | scaffold328.1:51431..64375 |
| Genes list of scaffold | scaffold328.1 |
| Synonym | pfu_aug2.0_30.1_00077 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_328.1_36496.t1 | 1 | 1 | TPR_11 | 17 | 88 | 8.0e-10 | 38.2 | 3.3e-12 | 3.5e-09 | 36.1 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 1 | SHNi-TPR | 18 | 55 | 6.6e-15 | 54.0 | 2.7e-17 | 2.8e-14 | 52.0 |
| pfu_aug1.0_328.1_36496.t1 | 1 | 1 | TPR_12 | 18 | 88 | 4.0e-12 | 45.8 | 6.4e-15 | 6.8e-12 | 45.1 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 1 | TPR_1 | 18 | 49 | 1.1e-11 | 43.7 | 1.1e-05 | 0.011 | 15.2 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 1 | TPR_2 | 18 | 48 | 6.2e-10 | 38.2 | 1.7e-05 | 0.018 | 14.8 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 1 | TPR_8 | 21 | 48 | 3.8e-08 | 32.5 | 2.5e-05 | 0.027 | 14.2 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 2 | TPR_1 | 60 | 88 | 1.1e-11 | 43.7 | 4.0e-09 | 4.2e-06 | 26.1 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 2 | TPR_2 | 60 | 88 | 6.2e-10 | 38.2 | 2.2e-07 | 0.00023 | 20.8 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 2 | TPR_8 | 61 | 88 | 3.8e-08 | 32.5 | 4.8e-07 | 0.0005 | 19.6 |
| pfu_aug1.0_328.1_36496.t1 | 2 | 2 | SHNi-TPR | 75 | 88 | 6.6e-15 | 54.0 | 0.53 | 560.0 | -0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_328.1_36496.t1 | gi|56206154|emb|CAI22463.1| | 2.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| maleGonad | 3 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_328.1_36496.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_328.1_36496.t1 atggcgacgctcgacgccggagatgaagctaaggaagcaaaactgaaggctgctgaatcattcctaaagctgggagaagt cagtctagaaactgaacaatacgagcaggctgtgtcagattttaaggaatgtcttaagatccaggagagtgtcttagaag cggaagacagactactggccgagacacactaccaactgggactagcatatgggtttgacaagaaatatgatgaatctatt acacactataaaaaggcaatacagggcatagaagataaagtagcaaaactgtcaaaggttgtagaagcaaatgcagaaag taaagacaaaggaaaaggattgtttttcagcttttgcgctttatcggttggagctacagtagaagtcagtaaatcagaac aatctacagaagcacagaagaaagcttcagacatcagccatttagtgaggcgaaagcgtaagccagatgaagaagaggag gacaaatctgacagtaaaaagacaaaacaagaagacggctcaggtgatgctcctactaaacagaacggtatagccaagtc cccaagcaagtctatggatgttgaagaacaaaagaagatagaagctgcagccaatcaacccaaggaggctgtggcatcgt ga |
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Protein
| Protein ID | pfu_aug1.0_328.1_36496.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_328.1_36496.t1 MATLDAGDEAKEAKLKAAESFLKLGEVSLETEQYEQAVSDFKECLKIQESVLEAEDRLLAETHYQLGLAYGFDKKYDESI THYKKAIQGIEDKVAKLSKVVEANAESKDKGKGLFFSFCALSVGATVEVSKSEQSTEAQKKASDISHLVRRKRKPDEEEE DKSDSKKTKQEDGSGDAPTKQNGIAKSPSKSMDVEEQKKIEAAANQPKEAVAS |
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