Gene
| Gene Model ID | pfu_aug1.0_328.1_36498 |
|---|---|
| Locus | scaffold328.1 : 73956 ... 81237 : + |
| To GenomeBrowser | scaffold328.1:73956..81237 |
| Genes list of scaffold | scaffold328.1 |
| Synonym | pfu_aug2.0_30.1_00079 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_328.1_36498.t1 | 1 | 1 | NAC | 37 | 93 | 1.4e-23 | 82.1 | 1.5e-27 | 2.3e-23 | 81.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_328.1_36498.t1 | gi|260818117|ref|XP_002603931.1| | hypothetical protein BRAFLDRAFT_131258 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_328.1_36498.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_328.1_36498.t1 atgatgtatcgtaatacgaatcgtatcgtgagtaaatatcgtgatatgtatcgtatcggaaccgcaagaaggaagaagaa ggtagtccatcgtacggccacaacagacgataaaaagttacaaagctcactcaaaaagttgtcggtcagcaatattcctg gaatagaggaggtaaatatgattaaagatgatggtactgtgatccacttcaataatccaaaagttcaggcatctttagca gccaatacgtttgcaatcactggacaagcagaaaacaaacagatagcagaaatgctgcctggaatcctgaaccagcttgg tgctgaaagcttcagtagcttaaagaaactagcatccacagtagctgcatcaggtgacaacaaaccgcccacagatgata ttgatgatgatgatgatggagtcccagaattggtagaaaattttgatgaaacatcaaaaggagaatag |
|
Protein
| Protein ID | pfu_aug1.0_328.1_36498.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_328.1_36498.t1 MMYRNTNRIVSKYRDMYRIGTARRKKKVVHRTATTDDKKLQSSLKKLSVSNIPGIEEVNMIKDDGTVIHFNNPKVQASLA ANTFAITGQAENKQIAEMLPGILNQLGAESFSSLKKLASTVAASGDNKPPTDDIDDDDDGVPELVENFDETSKGE |
|