Gene
Gene Model ID | pfu_aug1.0_328.1_36501 |
---|---|
Locus | scaffold328.1 : 131621 ... 141685 : - |
To GenomeBrowser | scaffold328.1:131621..141685 |
Genes list of scaffold | scaffold328.1 |
Synonym | pfu_aug2.0_30.1_00082 |
Manual annotation
Study field | ribosomal |
---|---|
Gene name | ribosomal protein S12 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_328.1_36501.t1 | 1 | 1 | Ribosomal_L7Ae | 1 | 66 | 2.6e-20 | 71.7 | 4.1e-24 | 3.0e-20 | 71.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_328.1_36501.t1 | gi|241913776|gb|ACS72284.1| | ribosomal protein S12 [Pinctada maxima] | 9.94922e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 4 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
mantle | 2 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 2 |
Transcript
Transcript ID | pfu_aug1.0_328.1_36501.t1 |
---|---|
Definition | - |
>pfu_aug1.0_328.1_36501.t1 acgtcaagcccatttgtgtgtccttgcaaataactgtgacgagcccatgtatgtcaaactggtagaagctctctgtacgg aacatggaatcaacctgctcaaggttgacgacaataagaaactaggggaatgggcaggactatgcaaaatagacaaagaa ggcaaagccaggaaaattgttggatgcagctgtgttgttgttaaggactatggcaaagagtcccaagccctggatgtact caacgactatttcaagaccaagaagtaa |
Protein
Protein ID | pfu_aug1.0_328.1_36501.t1 |
---|---|
Definition | - |
>pfu_aug1.0_328.1_36501.t1 RQAHLCVLANNCDEPMYVKLVEALCTEHGINLLKVDDNKKLGEWAGLCKIDKEGKARKIVGCSCVVVKDYGKESQALDVL NDYFKTKK |