Gene
| Gene Model ID | pfu_aug1.0_328.1_36501 |
|---|---|
| Locus | scaffold328.1 : 131621 ... 141685 : - |
| To GenomeBrowser | scaffold328.1:131621..141685 |
| Genes list of scaffold | scaffold328.1 |
| Synonym | pfu_aug2.0_30.1_00082 |
Manual annotation
| Study field | ribosomal |
|---|---|
| Gene name | ribosomal protein S12 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_328.1_36501.t1 | 1 | 1 | Ribosomal_L7Ae | 1 | 66 | 2.6e-20 | 71.7 | 4.1e-24 | 3.0e-20 | 71.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_328.1_36501.t1 | gi|241913776|gb|ACS72284.1| | ribosomal protein S12 [Pinctada maxima] | 9.94922e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_328.1_36501.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_328.1_36501.t1 acgtcaagcccatttgtgtgtccttgcaaataactgtgacgagcccatgtatgtcaaactggtagaagctctctgtacgg aacatggaatcaacctgctcaaggttgacgacaataagaaactaggggaatgggcaggactatgcaaaatagacaaagaa ggcaaagccaggaaaattgttggatgcagctgtgttgttgttaaggactatggcaaagagtcccaagccctggatgtact caacgactatttcaagaccaagaagtaa |
|
Protein
| Protein ID | pfu_aug1.0_328.1_36501.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_328.1_36501.t1 RQAHLCVLANNCDEPMYVKLVEALCTEHGINLLKVDDNKKLGEWAGLCKIDKEGKARKIVGCSCVVVKDYGKESQALDVL NDYFKTKK |
|