Gene
| Gene Model ID | pfu_aug1.0_3293.1_23285 |
|---|---|
| Locus | scaffold3293.1 : 14426 ... 23808 : + |
| To GenomeBrowser | scaffold3293.1:14426..23808 |
| Genes list of scaffold | scaffold3293.1 |
| Synonym | pfu_aug2.0_267.1_23784 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3293.1_23285.t1 | 8 | 1 | EF-hand_6 | 52 | 63 | 1.6e-16 | 58.6 | 0.86 | 1800.0 | -0.8 |
| pfu_aug1.0_3293.1_23285.t1 | 7 | 1 | EF-hand_1 | 71 | 97 | 9.1e-21 | 71.5 | 0.061 | 130.0 | 2.2 |
| pfu_aug1.0_3293.1_23285.t1 | 8 | 2 | EF-hand_6 | 72 | 97 | 1.6e-16 | 58.6 | 0.82 | 1700.0 | -0.7 |
| pfu_aug1.0_3293.1_23285.t1 | 4 | 1 | EF-hand_7 | 73 | 132 | 1.7e-23 | 82.5 | 0.0071 | 15.0 | 5.8 |
| pfu_aug1.0_3293.1_23285.t1 | 6 | 1 | EF-hand_8 | 83 | 133 | 4.1e-24 | 83.9 | 0.00031 | 0.65 | 9.6 |
| pfu_aug1.0_3293.1_23285.t1 | 6 | 2 | EF-hand_8 | 234 | 259 | 4.1e-24 | 83.9 | 0.00064 | 1.4 | 8.6 |
| pfu_aug1.0_3293.1_23285.t1 | 4 | 2 | EF-hand_7 | 234 | 347 | 1.7e-23 | 82.5 | 5.2e-07 | 0.0011 | 19.0 |
| pfu_aug1.0_3293.1_23285.t1 | 7 | 2 | EF-hand_1 | 234 | 259 | 9.1e-21 | 71.5 | 8.6e-07 | 0.0018 | 17.4 |
| pfu_aug1.0_3293.1_23285.t1 | 8 | 3 | EF-hand_6 | 234 | 259 | 1.6e-16 | 58.6 | 7.2e-06 | 0.015 | 15.1 |
| pfu_aug1.0_3293.1_23285.t1 | 5 | 1 | EF-hand_5 | 234 | 256 | 1.4e-10 | 39.9 | 0.06 | 130.0 | 2.1 |
| pfu_aug1.0_3293.1_23285.t1 | 8 | 4 | EF-hand_6 | 326 | 350 | 1.6e-16 | 58.6 | 0.2 | 420.0 | 1.2 |
| pfu_aug1.0_3293.1_23285.t1 | 7 | 3 | EF-hand_1 | 335 | 348 | 9.1e-21 | 71.5 | 0.066 | 140.0 | 2.1 |
| pfu_aug1.0_3293.1_23285.t1 | 6 | 3 | EF-hand_8 | 402 | 429 | 4.1e-24 | 83.9 | 0.00064 | 1.4 | 8.6 |
| pfu_aug1.0_3293.1_23285.t1 | 4 | 3 | EF-hand_7 | 403 | 461 | 1.7e-23 | 82.5 | 1.2e-09 | 2.5e-06 | 27.4 |
| pfu_aug1.0_3293.1_23285.t1 | 7 | 4 | EF-hand_1 | 403 | 430 | 9.1e-21 | 71.5 | 0.00015 | 0.31 | 10.4 |
| pfu_aug1.0_3293.1_23285.t1 | 8 | 5 | EF-hand_6 | 403 | 428 | 1.6e-16 | 58.6 | 0.00094 | 2.0 | 8.5 |
| pfu_aug1.0_3293.1_23285.t1 | 5 | 2 | EF-hand_5 | 414 | 426 | 1.4e-10 | 39.9 | 0.021 | 45.0 | 3.6 |
| pfu_aug1.0_3293.1_23285.t1 | 6 | 4 | EF-hand_8 | 415 | 464 | 4.1e-24 | 83.9 | 7.9e-10 | 1.7e-06 | 27.5 |
| pfu_aug1.0_3293.1_23285.t1 | 7 | 5 | EF-hand_1 | 439 | 460 | 9.1e-21 | 71.5 | 0.00054 | 1.1 | 8.6 |
| pfu_aug1.0_3293.1_23285.t1 | 8 | 6 | EF-hand_6 | 444 | 466 | 1.6e-16 | 58.6 | 0.04 | 84.0 | 3.4 |
| pfu_aug1.0_3293.1_23285.t1 | 5 | 3 | EF-hand_5 | 445 | 460 | 1.4e-10 | 39.9 | 0.00034 | 0.72 | 9.3 |
| pfu_aug1.0_3293.1_23285.t1 | 6 | 5 | EF-hand_8 | 518 | 543 | 4.1e-24 | 83.9 | 2.5e-06 | 0.0053 | 16.3 |
| pfu_aug1.0_3293.1_23285.t1 | 4 | 4 | EF-hand_7 | 518 | 575 | 1.7e-23 | 82.5 | 1.5e-11 | 3.2e-08 | 33.5 |
| pfu_aug1.0_3293.1_23285.t1 | 7 | 6 | EF-hand_1 | 518 | 543 | 9.1e-21 | 71.5 | 2.4e-08 | 5.1e-05 | 22.2 |
| pfu_aug1.0_3293.1_23285.t1 | 8 | 7 | EF-hand_6 | 518 | 543 | 1.6e-16 | 58.6 | 6.0e-08 | 0.00013 | 21.5 |
| pfu_aug1.0_3293.1_23285.t1 | 5 | 4 | EF-hand_5 | 518 | 541 | 1.4e-10 | 39.9 | 2.5e-05 | 0.052 | 12.8 |
| pfu_aug1.0_3293.1_23285.t1 | 6 | 6 | EF-hand_8 | 546 | 575 | 4.1e-24 | 83.9 | 6.5e-05 | 0.14 | 11.8 |
| pfu_aug1.0_3293.1_23285.t1 | 8 | 8 | EF-hand_6 | 556 | 574 | 1.6e-16 | 58.6 | 0.038 | 80.0 | 3.5 |
| pfu_aug1.0_3293.1_23285.t1 | 7 | 7 | EF-hand_1 | 557 | 575 | 9.1e-21 | 71.5 | 0.0065 | 14.0 | 5.3 |
| pfu_aug1.0_3293.1_23285.t1 | 5 | 5 | EF-hand_5 | 559 | 569 | 1.4e-10 | 39.9 | 0.015 | 32.0 | 4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3293.1_23285.t1 | gi|260802766|ref|XP_002596263.1| | hypothetical protein BRAFLDRAFT_117976 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3293.1_23285.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3293.1_23285.t1 atgggggttgttatttggagttttaaggaagaactacccaaagattgtcagactggtaatcgtgcagatattggaagtcg tatggagaatggtggtattaccagtagaaatggtatgcattcccgtatgtcacaagcctcccaacaggccaggctggaaa tcgacgagcttgaggccatgttacgtcagagaatcaagggaagcttttacgaggtcaagaaaaagttcaaggacaatgac ccagaacagaaaggaaatgtttcacgagaagctttccatcgagtgatcacgaccattctgaacgccagtattaaccagaa cgtatacaacagactgatggaacgtctgggattcaaggacaaacaggtcatcaactacagcgaattcttctcctatttcc acgagggggtcaactctaacgactatccccgctggatggaccctgtccagaggcagtggccggagagggccaccatgaac tcctcacaagtccacgcccaactcaaagaaaaagtcaaacaaaaacaccaaaaagaaataaacaaaatgctggaaaaagt aaacaatatctatatacagtacatttcatattcaggactgacatcgaccaggacaccaagaaggaaggagatagagagga agcagtccctagatatagaaagatggctgaaaaacaaattcagagaaggttgtcataatctacaggaagcttttgaagca aaggacaaatcaaataacggcgttgtcaccttcgacgacttcctgtccgtcctcgctacgaacaacttgaagctggagaa acgtctgctcgcggcgtttttgtcgcggtgtggcgttcaggctcgcagagatggggtcccatacagggaattcttacatc gtttccaggaccgctcggagttgggcatgacacataatatcttgaccaatccaaaacacagattcgatcttcgtccagaa atttctcgaggagaaatccgagatgtatggaagacattcatcacaaataccgataagacactggattaccatgaattcgt ccgtcattttggcttctccaagaaatcagcacatttccctaatgccaagaataacccacccagacgtggtgatgctgact acatgatcaggtcacgaaaactgaactgtgctgccgatatgctgcaagataacctcaggtcaaaggttgattatctatgg gaagatttgaggaaagaatttgttgagatggatccatacggaaccggctatgtatctaaggaggaatataaagacgttct cacagaactctgtgtccacctgagtgattacgaaatcaatttgctatgtgagaagttcgacatgaagaaagatggaagag tttcgtatattgagttcctgaaaccgtttgcgctgaagaagcagatttggcgtcatggaaacaacatgttgtcactgctg gcacacccacaaccagaactgcctataggagatatagtagaacctcctcagaagggacttcatggtatcacagccaaact gaggcaaaagttggctggagactggaagaatctgaggagagcgttcaggaaattagacacgcgtaacgatggatatttgt cagtcccagagttcagatctgtattgaaattagcaaacgttattttagacgaagacgaagtttatcacgtgcttacacag tttgatcataacatgtcaggaaagattccctacgaaaaattcattgaagagacattcaaaccaccaacccgtcaaagtgt gaaaaagctatga |
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Protein
| Protein ID | pfu_aug1.0_3293.1_23285.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3293.1_23285.t1 MGVVIWSFKEELPKDCQTGNRADIGSRMENGGITSRNGMHSRMSQASQQARLEIDELEAMLRQRIKGSFYEVKKKFKDND PEQKGNVSREAFHRVITTILNASINQNVYNRLMERLGFKDKQVINYSEFFSYFHEGVNSNDYPRWMDPVQRQWPERATMN SSQVHAQLKEKVKQKHQKEINKMLEKVNNIYIQYISYSGLTSTRTPRRKEIERKQSLDIERWLKNKFREGCHNLQEAFEA KDKSNNGVVTFDDFLSVLATNNLKLEKRLLAAFLSRCGVQARRDGVPYREFLHRFQDRSELGMTHNILTNPKHRFDLRPE ISRGEIRDVWKTFITNTDKTLDYHEFVRHFGFSKKSAHFPNAKNNPPRRGDADYMIRSRKLNCAADMLQDNLRSKVDYLW EDLRKEFVEMDPYGTGYVSKEEYKDVLTELCVHLSDYEINLLCEKFDMKKDGRVSYIEFLKPFALKKQIWRHGNNMLSLL AHPQPELPIGDIVEPPQKGLHGITAKLRQKLAGDWKNLRRAFRKLDTRNDGYLSVPEFRSVLKLANVILDEDEVYHVLTQ FDHNMSGKIPYEKFIEETFKPPTRQSVKKL |
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