Gene
| Gene Model ID | pfu_aug1.0_3293.1_23287 |
|---|---|
| Locus | scaffold3293.1 : 49806 ... 57740 : + |
| To GenomeBrowser | scaffold3293.1:49806..57740 |
| Genes list of scaffold | scaffold3293.1 |
| Synonym | pfu_aug2.0_320.1_00595 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3293.1_23287.t1 | 1 | 1 | S-AdoMet_synt_C | 78 | 213 | 0.0 | 247.4 | 0.0 | 0.0 | 247.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3293.1_23287.t1 | gi|260802572|ref|XP_002596166.1| | hypothetical protein BRAFLDRAFT_57135 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3293.1_23287.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3293.1_23287.t1 atgtcgacgccaatagtgaatgggaatcactatcaagaaattaaccatcattatgctgaggaatgcagccaggacgatat tggaaccttccttttcacgtcagaatccgtgggtgaaggccacccaggatttgattacaaaacctgtaatgtgcttgtgg cactagaacaacagagtcctgatattgcccagggtgtccacgtagacagacacgaagatgacattggtgcaggagatcag ggagatgcaggtttgactggtaggaaaattattgtcgatacatacggtgggtggggtgcccacggaggaggggcattttc aggaaaagacttttcaaaagtagatcgatcggcagcctatgcagcaagatgggtggcaaaatccctcgtcaaaaacgggc tctgcaaacgtgttcttgtccaggtgtcatatgccattggtatttctgaacccatttccatcacagtgttcagctacggc acatcaaaattatcagaaaaggaattactagctgttgtaaagaagaatttcgacttaagacctggagtcattgtgaagga gttgaacttgagagcaccaatctaccaaaagacagcatgctacggacatttcggacgaccagatttcccctgggaacagc caaagaaacttgttgtttag |
|
Protein
| Protein ID | pfu_aug1.0_3293.1_23287.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3293.1_23287.t1 MSTPIVNGNHYQEINHHYAEECSQDDIGTFLFTSESVGEGHPGFDYKTCNVLVALEQQSPDIAQGVHVDRHEDDIGAGDQ GDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFSKVDRSAAYAARWVAKSLVKNGLCKRVLVQVSYAIGISEPISITVFSYG TSKLSEKELLAVVKKNFDLRPGVIVKELNLRAPIYQKTACYGHFGRPDFPWEQPKKLVV |
|