Gene
| Gene Model ID | pfu_aug1.0_3301.1_44644 |
|---|---|
| Locus | scaffold3301.1 : 23126 ... 29389 : + |
| To GenomeBrowser | scaffold3301.1:23126..29389 |
| Genes list of scaffold | scaffold3301.1 |
| Synonym | pfu_aug2.0_314.1_13986 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3301.1_44644.t1 | 1 | 1 | GIDE | 98 | 251 | 2.5e-23 | 82.2 | 1.9e-26 | 4.8e-23 | 81.2 |
| pfu_aug1.0_3301.1_44644.t1 | 1 | 1 | zf-C3HC4_3 | 308 | 353 | 1.6e-14 | 53.3 | 1.0e-17 | 2.5e-14 | 52.6 |
| pfu_aug1.0_3301.1_44644.t1 | 1 | 1 | zf-C3HC4_2 | 310 | 347 | 3.6e-06 | 26.8 | 2.9e-09 | 7.2e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3301.1_44644.t1 | gi|149694310|ref|XP_001504389.1| | PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 isoform X1 [Equus caballus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3301.1_44644.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3301.1_44644.t1 atgaggattcttgatgcagttgacattggttccctggtggggatagggattgatgctcttgttgcctacgctctgtatag atatcataaaagttcagctagatcagtcgatgaagtgaagcgagtggagtgccatttaatagggcctgaactagtgagag aactagagaagcagccagacagaagtttaccttacgtttgcattgatggatttgtgtcgacagttgggaatgacgttagg agtcactatggagatcaaaggggagttctacagaatatctcactgatagaacacaagtccaagaggagtaacggagtctg gacagatgccaaaaatatcatcagagacgtctgggagtcagtgcctttctatctgcgatccatggtacatgaagaaccca ggattctcatcatagatccaaggtctgcaaagtatctggaagaagacttaacgacaacgtatgacaaatttgaaccaagt aagacgggaattgtgcagcgcggtattgatcggatagctggggaggtactgaaagggtatcatgaaacagagaggatgct actgaaaggaactcatcttgttggaattggacgattggttattgatggcaatgtaataaaactgagacctcctgaagatg ggcaaacctacatcctaaccaagaaaagccgggaggaaattatttctagtttgtcacacacaacaaatacgcttaaaatt tgcttgtatgtattcggtggtctgggctgtgtactgacgctattccttgtcgttagacttgtcaagaaattaatacggta catcaaagaccgtcgcatgcaggaacaactctatagagcccgagaacaagctgatgcagatagaatcgtacgttcacgaa gttcaaatgagcaatcagttgttgatctctccgatgatgctacaacctgtgtaatttgcctgaccaatcgtagagaagtc gttttgcttgactgtggacatgtttgtttatgtgcagactgtgttatcgctttacctcagccgaagaaatgtccgatttg tcgaagtagtgtatccagattcatacctgcctatatagcgtag |
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Protein
| Protein ID | pfu_aug1.0_3301.1_44644.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3301.1_44644.t1 MRILDAVDIGSLVGIGIDALVAYALYRYHKSSARSVDEVKRVECHLIGPELVRELEKQPDRSLPYVCIDGFVSTVGNDVR SHYGDQRGVLQNISLIEHKSKRSNGVWTDAKNIIRDVWESVPFYLRSMVHEEPRILIIDPRSAKYLEEDLTTTYDKFEPS KTGIVQRGIDRIAGEVLKGYHETERMLLKGTHLVGIGRLVIDGNVIKLRPPEDGQTYILTKKSREEIISSLSHTTNTLKI CLYVFGGLGCVLTLFLVVRLVKKLIRYIKDRRMQEQLYRAREQADADRIVRSRSSNEQSVVDLSDDATTCVICLTNRREV VLLDCGHVCLCADCVIALPQPKKCPICRSSVSRFIPAYIA |
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