Gene
| Gene Model ID | pfu_aug1.0_33020.1_70067 |
|---|---|
| Locus | scaffold33020.1 : 163 ... 6859 : - |
| To GenomeBrowser | scaffold33020.1:163..6859 |
| Genes list of scaffold | scaffold33020.1 |
| Synonym | pfu_aug2.0_386.1_20705 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_33020.1_70067.t1 | 1 | 1 | Collagen | 165 | 223 | 2.3e-09 | 36.6 | 6.9e-12 | 5.1e-08 | 32.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_33020.1_70067.t1 | gi|260829317|ref|XP_002609608.1| | hypothetical protein BRAFLDRAFT_87829 [Branchiostoma floridae] | 4.0e-25 |
Transcript
| Transcript ID | pfu_aug1.0_33020.1_70067.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33020.1_70067.t1 attacatgagtatccatttttctttcagtcgttatttcgatgaaggttttcctagtaaattttcttttacaacaacatat cgtctagctgccttaactcgtagagagacatggaatatcattgacattcaggatagatatgataatactcaattcgctgt tcagtttgatggaggaaagaaacagataaaagttatttatatggatcgttatgacaacacagagaaagtcgctatattca acaagaaagaaaaaatgaagaaaataagaaaggcattcaaaagggaatggaagaagattcatatcagtgtacaagacggt tacgtggccctgagcgtggattgtgaggctatagaaaaagtacctatgggatccatcgccgatattgatctgaatggaga aatactcattggacagtccgtgtctaaaccaagacccgcaaagagacgtggagatatgggttgtactattgagtgtccag caggtcttcctggcacagacggaaaaccggggttaccaggagaaagaggtcttcctggattggtagggaagcctggtcca cagggagaaagtattgaaggacctgaaggaccagagggcgatgaaggtcctcaaggaccaccaggaccccagggcttacc tggaccagcaggtcaacaagggctaaaaggagacaagataacagccgattatcggatcagagccacaattcgtttattga ttgagttctttgatttgcaatgcatgaaaagggattaa |
|
Protein
| Protein ID | pfu_aug1.0_33020.1_70067.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33020.1_70067.t1 YMSIHFSFSRYFDEGFPSKFSFTTTYRLAALTRRETWNIIDIQDRYDNTQFAVQFDGGKKQIKVIYMDRYDNTEKVAIFN KKEKMKKIRKAFKREWKKIHISVQDGYVALSVDCEAIEKVPMGSIADIDLNGEILIGQSVSKPRPAKRRGDMGCTIECPA GLPGTDGKPGLPGERGLPGLVGKPGPQGESIEGPEGPEGDEGPQGPPGPQGLPGPAGQQGLKGDKITADYRIRATIRLLI EFFDLQCMKRD |
|