Gene
| Gene Model ID | pfu_aug1.0_3312.1_01415 |
|---|---|
| Locus | scaffold3312.1 : 19276 ... 37435 : - |
| To GenomeBrowser | scaffold3312.1:19276..37435 |
| Genes list of scaffold | scaffold3312.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3312.1_01415.t1 | 2 | 1 | Ldl_recept_a | 76 | 109 | 1.8e-07 | 30.9 | 1.2e-11 | 1.8e-07 | 30.9 |
| pfu_aug1.0_3312.1_01415.t1 | 2 | 2 | Ldl_recept_a | 183 | 191 | 1.8e-07 | 30.9 | 0.55 | 8100.0 | -3.2 |
Transcript
| Transcript ID | pfu_aug1.0_3312.1_01415.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3312.1_01415.t1 atgcaaccaatggaattccaatttattataccggcaccgactgttgactatgcagaaaggcgaatggtggacgaatggtg tgattctgaatcactgacgagagttaagtacccgaaaggtgcatctctggcctacgctgtaaatttatctgtttttaatt acgccatgaatttgaagacgtgtaagattgatatagtatacatgaaagtgtatttcattacagagcgatgtcttgaagat gaatttcaatgtcttagtggagaatgtatacctattggatttaaaaatgatatgattgctgattgtaaagataaatccga cttgaagcgggctacaggtatatcgacagcagacgaccgaatagcttgtgattttacatcgtctttttgtggatggcaga ttaggtcaaatgcaacaattaaacaatttatttcagaaggtaaagctgtaattaaggtcataggtgatcggattacgaga actagcttggtcagtccagttattccttatggaaaaagcttcgaattgatctattctgtaaataagagtcagaattgtat ttggaagttgcaaagattctggtcatcaaactggaaaatgggaaattgtacagaatgtacattgaaagcaactaatgtga aaaagatatcactagctctgtggattacgggacatggttattatgagttgaccctggaattttcatttagaggaatacat caatccaaacctatcggcaaaatgtccgtaagtcgaattgataaatggaacattatgaatttagtaaaattaacttcaaa gctgttttcacatgaaattgctatgaaagtaaacgaaaatatgttcgcaggttgctatggttatgataatggagggaaag gttag |
|
Protein
| Protein ID | pfu_aug1.0_3312.1_01415.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3312.1_01415.t1 MQPMEFQFIIPAPTVDYAERRMVDEWCDSESLTRVKYPKGASLAYAVNLSVFNYAMNLKTCKIDIVYMKVYFITERCLED EFQCLSGECIPIGFKNDMIADCKDKSDLKRATGISTADDRIACDFTSSFCGWQIRSNATIKQFISEGKAVIKVIGDRITR TSLVSPVIPYGKSFELIYSVNKSQNCIWKLQRFWSSNWKMGNCTECTLKATNVKKISLALWITGHGYYELTLEFSFRGIH QSKPIGKMSVSRIDKWNIMNLVKLTSKLFSHEIAMKVNENMFAGCYGYDNGGKG |
|