Gene
| Gene Model ID | pfu_aug1.0_33241.1_26632 |
|---|---|
| Locus | scaffold33241.1 : 2617 ... 3935 : - |
| To GenomeBrowser | scaffold33241.1:2617..3935 |
| Genes list of scaffold | scaffold33241.1 |
| Synonym | pfu_aug2.0_680.1_01047 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_33241.1_26632.t1 | 1 | 1 | Neur_chan_memb | 60 | 310 | 5.5e-22 | 78.8 | 1.2e-25 | 8.6e-22 | 78.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_33241.1_26632.t1 | gi|260786731|ref|XP_002588410.1| | hypothetical protein BRAFLDRAFT_63359 [Branchiostoma floridae] | 3.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_33241.1_26632.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33241.1_26632.t1 atgagagaaatcaaactggttccgtcaagaaaacgcatttataccagttttatgggcagtaatggagcatggacattgaa gggaactagggtggatttgacagttagaaatcataccggagttttgtcttttaaacttaatttagaacgtcgatcaacat tcttcgtgatgaatttgtttgttccggtggtagtgctaattcttctgaactcctttgtgtttatcctaccagccgattcc ggggagagaacaggctttgcgataacatgcatgcttgctatagccgtctttctgactttagtgtcggagacgttaccaaa aacatcaaaaccactgtcagttctatcttttatactcatgttatgtctgattttatcaacttgtgcatcaataatgacca tcattagtttatacattcaccataaagaagaaacgaaaccagtgccgaaattagttcagaattttttttcgatgaaaatt ggtagatgcatttgctgttgccgtggaaaattgaagaggtcgttcaaaactcttacatctcgtgtaagtaaaatttgcaa atcccgagttcgcgaggaaacaaaatcggcgagctcggtgaggtctataattgtgggaagcccaaagggttcgacgttag acatgactaagaattttcccggtgatgtggcgagcatgcgcagagtgtcatcagttcacgttgagaacttggatatgatt gacgaagatgaagacataaattctcgttgtaaagatcccttaaaaattctgtcatctcttggggaaaacggcgaaattga gccgaacctaactcctggggacaaaggaaaacaaagtgaagatgaagattgggaagaggacaaaataacatggaaaattg tggcgaaaaaattcgactttttctgttttatctcagtgaatgccatggcaggtgctctcggtaccttgtattttatgatt agttccggtagattatag |
|
Protein
| Protein ID | pfu_aug1.0_33241.1_26632.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33241.1_26632.t1 MREIKLVPSRKRIYTSFMGSNGAWTLKGTRVDLTVRNHTGVLSFKLNLERRSTFFVMNLFVPVVVLILLNSFVFILPADS GERTGFAITCMLAIAVFLTLVSETLPKTSKPLSVLSFILMLCLILSTCASIMTIISLYIHHKEETKPVPKLVQNFFSMKI GRCICCCRGKLKRSFKTLTSRVSKICKSRVREETKSASSVRSIIVGSPKGSTLDMTKNFPGDVASMRRVSSVHVENLDMI DEDEDINSRCKDPLKILSSLGENGEIEPNLTPGDKGKQSEDEDWEEDKITWKIVAKKFDFFCFISVNAMAGALGTLYFMI SSGRL |
|