Gene
| Gene Model ID | pfu_aug1.0_3348.1_37567 |
|---|---|
| Locus | scaffold3348.1 : 26470 ... 47145 : - |
| To GenomeBrowser | scaffold3348.1:26470..47145 |
| Genes list of scaffold | scaffold3348.1 |
| Synonym | pfu_aug2.0_447.1_24038 |
Manual annotation
| Study field | immunity |
|---|---|
| Gene name | cathepsin B |
| Description | reciprocal BLASYN best hit to NCBI Accession HQ845754 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3348.1_37567.t1 | 1 | 1 | Propeptide_C1 | 29 | 70 | 3.2e-11 | 42.6 | 1.8e-14 | 8.7e-11 | 41.2 |
| pfu_aug1.0_3348.1_37567.t1 | 1 | 1 | Peptidase_C1 | 89 | 334 | 0.0 | 215.7 | 0.0 | 0.0 | 215.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3348.1_37567.t1 | gi|323147412|gb|ADX32985.1| | cathepsin B [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3348.1_37567.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3348.1_37567.t1 atgaaggtcctcattctcttagcccttaccgcccttgctgtggcagattatgtcttcgattccgagtcgaaagtcttcaa gcctctctctgatgaaatgatctggtttattaacaaagtcaatacatcatggaaagcaggccagaacttccatcacatca agcaagaggacagactcgaccatgttaagattatgtgcggtacataccttgacgttcctccacacctccagcttccagtc agggacattgaaccacgtaaagacctgccagatacctttgatgccaggacacagtggtcaaactgcccaaccatcaagga aattagggaccagggatcatgtggatcatgctgggcctttggtgctgtagaatctatgagtgacagaatctgtattaagt caaacggtcaacagaacgcacatatctctgccgaagatctgacatcatgctgtagaagttgtggaaacggatgtaatgga ggtttcttaagtggagcttgggaatactacaaacgtgacggacttgtcacaggtggtcagtacaacagccaccagggatg ccaaccctacactgtcaaagcctgtgaccatcatgttgtcggcaaactccagccctgcagcaaaaaggaagagcacaccc ccgtctgtaaacatgaatgtgaatcgggatataacgtgtcatacaccaaagacaaacattatggtgccacagcttactct gtaagaggtgtccaacaaattatgacagaaatcatgaccaacggtccagtagagggcgccttcactgtctacgctgattt cccacaatataaatctggtgtatacaagcacaccactggatccccccttggaggtcatgccatcaagatcatgggctggg gaactgagggaggagaagattattggttggttgccaactcatggaatccagactggggaaatcaaggaacatttaaaatc ctcagaggaagggacgagtgtggaattgagtctcagatcgcagctggagaacccaaattatcataa |
|
Protein
| Protein ID | pfu_aug1.0_3348.1_37567.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3348.1_37567.t1 MKVLILLALTALAVADYVFDSESKVFKPLSDEMIWFINKVNTSWKAGQNFHHIKQEDRLDHVKIMCGTYLDVPPHLQLPV RDIEPRKDLPDTFDARTQWSNCPTIKEIRDQGSCGSCWAFGAVESMSDRICIKSNGQQNAHISAEDLTSCCRSCGNGCNG GFLSGAWEYYKRDGLVTGGQYNSHQGCQPYTVKACDHHVVGKLQPCSKKEEHTPVCKHECESGYNVSYTKDKHYGATAYS VRGVQQIMTEIMTNGPVEGAFTVYADFPQYKSGVYKHTTGSPLGGHAIKIMGWGTEGGEDYWLVANSWNPDWGNQGTFKI LRGRDECGIESQIAAGEPKLS |
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