Gene
| Gene Model ID | pfu_aug1.0_33531.1_12152 |
|---|---|
| Locus | scaffold33531.1 : 1 ... 6801 : + |
| To GenomeBrowser | scaffold33531.1:1..6801 |
| Genes list of scaffold | scaffold33531.1 |
| Synonym | pfu_aug2.0_361.1_04057 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | calponin |
| Description | Calponin partial sequence. BLASTP top hit to AB052656 (Mytilus galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_33531.1_12152.t1 | 9 | 1 | Calponin | 39 | 62 | 0.0 | 215.1 | 1.9e-12 | 1.4e-08 | 33.9 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 2 | Calponin | 78 | 101 | 0.0 | 215.1 | 3.2e-14 | 2.4e-10 | 39.5 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 3 | Calponin | 117 | 140 | 0.0 | 215.1 | 4.9e-14 | 3.6e-10 | 38.9 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 4 | Calponin | 156 | 179 | 0.0 | 215.1 | 1.2e-13 | 8.8e-10 | 37.7 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 5 | Calponin | 188 | 197 | 0.0 | 215.1 | 0.028 | 210.0 | 1.3 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 6 | Calponin | 195 | 218 | 0.0 | 215.1 | 1.0e-12 | 7.7e-09 | 34.7 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 7 | Calponin | 227 | 236 | 0.0 | 215.1 | 0.028 | 210.0 | 1.3 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 8 | Calponin | 234 | 257 | 0.0 | 215.1 | 3.4e-12 | 2.5e-08 | 33.1 |
| pfu_aug1.0_33531.1_12152.t1 | 9 | 9 | Calponin | 273 | 295 | 0.0 | 215.1 | 1.3e-09 | 9.6e-06 | 24.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_33531.1_12152.t1 | gi|350019747|dbj|GAA43144.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_33531.1_12152.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33531.1_12152.t1 gctcaaaggaacggtcatgagtcggttgaaaagggcttaatctgtggggcaaaacctgtcgagaaacatgtggtacattt taccgaggaacaaaagagggcaggtcaaggcatcatcggattacaagctggaacaaacaaatgcgcaagtcaaaaaggaa tgaaaataggaggagcacgccacattgccgacatcaaagcagacgacatgaatcgtgagggccaaggtatactttctgct caagcaggcaccaataaatttgcttcccagaagggcatgtcgatcggatcagtcaggcatatcgctgacattagggcaga cgacatgtctcaagaaggtcacggggtcattggtctacaagccggaagtaataagtttgcaagtcaatcggggatgagtt ttggcgccgttcgtcacatttcggacataagagctgacgacatgtcacaagaaggtcatggggtgattggtctccaggcc ggaagtaacaagggcgcaagtcaatcgggaatgagtttcggtgccgttcgtcacatttcggacattagggccgatgatat gtcacaagaaggtcaaggagttattggacttcagtctggaagtaatcaatttgccagtcaaaagggaatgtcgtttggaa acgtgcgtcatatttcagatataagagcagacgaaatgtcacaggaaggacaaggagttattggccttcaatccggaagt aacaagggcgcaagtcaatctggaatgtcattcggaagcgttcgccatattgccgatatccgcgcggatgaatacgacca aagcagcgccggaaccattggactgcagtacggcagtaacgaaggagcgagtcaatcaggcatgactggattcggaacaa cgcgcggtgtggctgacatgaaaattgacgatctcgccgaagcttccagggcgatgtattga |
|
Protein
| Protein ID | pfu_aug1.0_33531.1_12152.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33531.1_12152.t1 AQRNGHESVEKGLICGAKPVEKHVVHFTEEQKRAGQGIIGLQAGTNKCASQKGMKIGGARHIADIKADDMNREGQGILSA QAGTNKFASQKGMSIGSVRHIADIRADDMSQEGHGVIGLQAGSNKFASQSGMSFGAVRHISDIRADDMSQEGHGVIGLQA GSNKGASQSGMSFGAVRHISDIRADDMSQEGQGVIGLQSGSNQFASQKGMSFGNVRHISDIRADEMSQEGQGVIGLQSGS NKGASQSGMSFGSVRHIADIRADEYDQSSAGTIGLQYGSNEGASQSGMTGFGTTRGVADMKIDDLAEASRAMY |
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