Gene
| Gene Model ID | pfu_aug1.0_3359.1_66660 |
|---|---|
| Locus | scaffold3359.1 : 62816 ... 69794 : + |
| To GenomeBrowser | scaffold3359.1:62816..69794 |
| Genes list of scaffold | scaffold3359.1 |
| Synonym | pfu_aug2.0_79.1_30144 |
Manual annotation
| Study field | signal molecules |
|---|---|
| Gene name | Tyrosine-protein kinase transmembrane receptor Ror |
| Description | NCBI BlastP top hit to Aplysia californica ror precursor [NP_001191466.1] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3359.1_66660.t1 | 2 | 1 | Pkinase_Tyr | 84 | 352 | 0.0 | 323.5 | 0.0 | 0.0 | 322.2 |
| pfu_aug1.0_3359.1_66660.t1 | 1 | 1 | Pkinase | 84 | 349 | 0.0 | 165.5 | 0.0 | 0.0 | 165.0 |
| pfu_aug1.0_3359.1_66660.t1 | 2 | 2 | Pkinase_Tyr | 526 | 557 | 0.0 | 323.5 | 0.58 | 2100.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3359.1_66660.t1 | gi|325296869|ref|NP_001191466.1| | ror precursor [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_3359.1_66660.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3359.1_66660.t1 atgaaagcttccttatcttttacagtgggtgctgagccagttaataagctgatgtacatccttgtacctggcattatcgt acctctggcactagtcatactgattgccgtggtttgtctgtgccagcggcacaaagcatcaaattccaaggaaggaaact cggtaccttctcagttaaactctgaaacactacctctaacggggaaagggggaggatgtaggacgaaagaattccaactc tcacaaatcagattcttacaggagcttggagagggcgcatttggtaaagtttatcgtggagaggtcgccggaataccaga gaaagtcgcaattaaaactctaaaggagaatgccatgccgaaagtgaagaatgatttcaggagagaggtggatctaatgt cagaactacggcatccaaacattgtgtgcttattgggagtgtgtatgaagcaagaaccaatgtgtatgttgtttgaacac atgccgtatggagatttacacgaatatctgatatcacactcacctaactctgatatatctagtgaagtaggcgacagtag cggcaagaaaatgattttggaatatccagaaatgttacacattgcgacacagatagctgccggaatggaatatttagcta gtcatcattttgtacaccgcgatctggctgccagaaacgtgcttgttggtgaaggtctgtccgttaagatttctgatttt ggtttatctagagacatctattcctctgactactatagagtacagagtaaatctctgttacctgtcagatggatgccgcc agagtcaatcatgtatggaaagtttacaacagagagtgatatctggtcatttggagtgttattatgggaaatatttagtt acggtcttcagccgtattatggatactcaaaccaagaagtaattgaggtagtccgtgcgcgtcaaattctaccaaatcca gatgattgcccgacaaggatttatggtgtaatggtggaatgctggcatgaaatgccgggaagacgtcctccattcagaga aatccacgcgcgactacgtcagtggaagacggaggttatgatgcaaaatccgcactggagcttgagtcagagtcactcgg cacatagtagtagtacacaacacagcacacagagtggtccgagtcaccacagtagtactggcccgagtaacaccaccgcc atgaccgggcttacaggaagtagtggtggctcagaccccacacatccacatggccaaatccaggtcatggcaccaccaaa ttaccacgaattacccagagtgcattatatgccaaatcagactcatatgccccctcaccaaatgccgcagtatgctgcgc ctcagccgcatcacatgatggaacatccaccggtggtaaacatgaccagtcaatccaagccacaacaacaaccactctat ccagtgataaatcaaaacggaccttcgaaaatatcacccgcaggctcgatagcctcgagtcaaaagtcatcgataagttc tacatcacaagattcgtcccctaactacaaaccagggccagcaactctgcccctaactcaaacaaatgtgaataattgtg tttcaaatggaccccagttaaatgggccatcaacggactgccaaagatttaacagtcttatgacacaaaattcttacatt cccgaacatcggaccgcagattaccatgagtag |
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Protein
| Protein ID | pfu_aug1.0_3359.1_66660.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3359.1_66660.t1 MKASLSFTVGAEPVNKLMYILVPGIIVPLALVILIAVVCLCQRHKASNSKEGNSVPSQLNSETLPLTGKGGGCRTKEFQL SQIRFLQELGEGAFGKVYRGEVAGIPEKVAIKTLKENAMPKVKNDFRREVDLMSELRHPNIVCLLGVCMKQEPMCMLFEH MPYGDLHEYLISHSPNSDISSEVGDSSGKKMILEYPEMLHIATQIAAGMEYLASHHFVHRDLAARNVLVGEGLSVKISDF GLSRDIYSSDYYRVQSKSLLPVRWMPPESIMYGKFTTESDIWSFGVLLWEIFSYGLQPYYGYSNQEVIEVVRARQILPNP DDCPTRIYGVMVECWHEMPGRRPPFREIHARLRQWKTEVMMQNPHWSLSQSHSAHSSSTQHSTQSGPSHHSSTGPSNTTA MTGLTGSSGGSDPTHPHGQIQVMAPPNYHELPRVHYMPNQTHMPPHQMPQYAAPQPHHMMEHPPVVNMTSQSKPQQQPLY PVINQNGPSKISPAGSIASSQKSSISSTSQDSSPNYKPGPATLPLTQTNVNNCVSNGPQLNGPSTDCQRFNSLMTQNSYI PEHRTADYHE |
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