Gene
| Gene Model ID | pfu_aug1.0_3370.1_59211 |
|---|---|
| Locus | scaffold3370.1 : 25102 ... 40155 : - |
| To GenomeBrowser | scaffold3370.1:25102..40155 |
| Genes list of scaffold | scaffold3370.1 |
| Synonym | pfu_aug2.0_209.1_30433 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3370.1_59211.t1 | 3 | 1 | VEFS-Box | 109 | 135 | 0.0 | 156.5 | 0.12 | 1800.0 | -1.6 |
| pfu_aug1.0_3370.1_59211.t1 | 3 | 2 | VEFS-Box | 251 | 305 | 0.0 | 156.5 | 1.6e-18 | 2.4e-14 | 53.1 |
| pfu_aug1.0_3370.1_59211.t1 | 3 | 3 | VEFS-Box | 324 | 407 | 0.0 | 156.5 | 1.9e-34 | 2.8e-30 | 104.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3370.1_59211.t1 | gi|241859191|ref|XP_002416184.1| | polycomb protein suz12, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 5 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_3370.1_59211.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3370.1_59211.t1 atggaatattgtttttctgaacaggaaaatgtgaaaattgaaatatttctttcttcagacatcaatgttgatacagtaga agtggatgtgtcattgatcaaagtgtgtcatgccaaaagaaaagacatggttgtccctgtgtcgaaagcagccttaggga aattccaagtgccaatcaacccccaaccagattctacaaagacaggggaaagtttagttgtgcctcatggacatttttgt catgtgaatggaaccactgtgaaatcatttagcttagtacttagtgtaagatatccattgaatggctccccaatgcctaa cggatattgtaatggtgatgtagattcagaagcagaggaacctcctcacaagaggcggcggaacggtcagatcactcagc tggaggagaaggatttcatccattacagtaccgaactagtcatatacgatagatatggacagtgtcaactgacagacgga gattataaactcatactgtacgagcagggaaacaaatcaaatgcatcgtgggagtctgtcatggaaggaaagcctcaccc aaagggataccgagtggatgtctcaataaacgagcgatatgacggatcttatgcaggaaatcctcaggacctacacagtc acataggttatgccttcagtcgccgtgggccagttagacgcacaccagtcactcacatcctagtgtatcgcccaaaaagg ccagaatccagcttaagtgaatttatggaacaagaaaatgacatgcagacaaataaacagtttgtccagggtcacaatag gttatattatcactcgttgacttgtgagcccatgaaacctcaggatgttgatgtagacagtgaagatgaaaatgacccag cttggctgcggaagaagtctgttcagtgtcttgatgtgagaattgcgaaatttttccccagcgaaaataaccatgtttac agtatcagaaaaaggatgatagatgagtttacagatgtgaatgaaggagaaaaggaattgatgaagttatggaaccttct catcatgaaatacaattatattgcagactgccagattccagaggcttgccaaaaatttgttgaggaacatggccaagaat taatatgcaagaacctttaccgtaacttcattgtacacttgataaatttatttgacttcagtcttatacgcccagattta gttcatcggactgttagtatgttagacgacttgaaagaagaaattggagtttcgtag |
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Protein
| Protein ID | pfu_aug1.0_3370.1_59211.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3370.1_59211.t1 MEYCFSEQENVKIEIFLSSDINVDTVEVDVSLIKVCHAKRKDMVVPVSKAALGKFQVPINPQPDSTKTGESLVVPHGHFC HVNGTTVKSFSLVLSVRYPLNGSPMPNGYCNGDVDSEAEEPPHKRRRNGQITQLEEKDFIHYSTELVIYDRYGQCQLTDG DYKLILYEQGNKSNASWESVMEGKPHPKGYRVDVSINERYDGSYAGNPQDLHSHIGYAFSRRGPVRRTPVTHILVYRPKR PESSLSEFMEQENDMQTNKQFVQGHNRLYYHSLTCEPMKPQDVDVDSEDENDPAWLRKKSVQCLDVRIAKFFPSENNHVY SIRKRMIDEFTDVNEGEKELMKLWNLLIMKYNYIADCQIPEACQKFVEEHGQELICKNLYRNFIVHLINLFDFSLIRPDL VHRTVSMLDDLKEEIGVS |
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