Gene
| Gene Model ID | pfu_aug1.0_33775.1_70101 |
|---|---|
| Locus | scaffold33775.1 : 1 ... 14139 : + |
| To GenomeBrowser | scaffold33775.1:1..14139 |
| Genes list of scaffold | scaffold33775.1 |
| Synonym | pfu_aug2.0_224.1_13821 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_33775.1_70101.t1 | 3 | 1 | JAB | 161 | 180 | 4.8e-11 | 42.4 | 0.42 | 2100.0 | -1.6 |
| pfu_aug1.0_33775.1_70101.t1 | 3 | 2 | JAB | 257 | 307 | 4.8e-11 | 42.4 | 0.86 | 4300.0 | -2.6 |
| pfu_aug1.0_33775.1_70101.t1 | 1 | 1 | SWIRM | 278 | 318 | 5.2e-06 | 26.4 | 3.4e-09 | 1.7e-05 | 24.8 |
| pfu_aug1.0_33775.1_70101.t1 | 3 | 3 | JAB | 436 | 526 | 4.8e-11 | 42.4 | 4.8e-14 | 2.4e-10 | 40.1 |
| pfu_aug1.0_33775.1_70101.t1 | 1 | 1 | Prok-JAB | 443 | 521 | 9.5e-07 | 28.3 | 4.1e-10 | 2.0e-06 | 27.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_33775.1_70101.t1 | gi|147906663|ref|NP_001090503.1| | histone H2A deubiquitinase MYSM1 [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_33775.1_70101.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33775.1_70101.t1 gcaaaaggagatactgataccgaggatttgcttttgactgattcctgtcttcatactctagcatcaaaacccagagaatt aaaccctaattctgtaaactcacccaaatctcctagtcagaataacaggaattctgtgttatcaagacaaaatgcttcac ctaaagtcgcaacaaaaaatgtgaaaaatatgatgaatcagaagacagtatcatcagttagcactctgtccaggtctgtg aaaaaggaagctgcatttgatcctatatctgaagtattagcctcggtgaccactgcccagccaaccataacaacattacg acctagttctgcagctgtttctatgaccttgacccagtcaataggtcaggtgtctaattcctcactgttagcacagctaa ggtctcaagttcagcagagtaaagtgaatgttttaaactctgtagacaaagtgtttgatccatcaggtgatatagtatta gcctctcatgcatcactgaatacatttcctgaccagaaaatagtaaaaacacattctaaaaagaattccaaacctgaaat attagaaactatggagattaaatggaatttacataaacaatccttggatgttgaagaggataagaaaaaattacaactga gtccgacattagagaataagttagcaagtagcacaggcataatagaaaatctggatcgtttttgtgctgtggcagatatc attactgaaggagaagatttggaagatgatgaagaaatagatatagaaaatgaagatgacgtagaggagaacccagttct acaaaatagatcggcatcgcctaactctgtgaaaaaatgtcaaccaagctacctcaataaaacttcagtacgaccgggtc taaagaattgtggggacgtcaatgtcataggcagaattcatgcttacctagaatgtacaggggtcatcaactttggttgt gaacaatgctgttataataatccatcaagacctccgtcatcggggccccgtgatagactgcccaaagaaaacgtacagat ctgtatggctaaactggaatccatgagacccaggaaaagacgtattaaggatgcttatggtcagtggatagatgaaaaag aggctcaaggaaaaactatagagcatatagagggagctgaggagacagatgattctatcaaacagaaggttgctcgtcat accaaatctaactatgatccatttaaacttataccttgtctcaagttttcagaggagaaaaaggctccctttaacgtaga ggtatataatagtgccttgatcacgatggacctacatgctcatgtatctaagacggaggttataggactactagggggcg tgttctgtgacaaatcacacacgttagaagtccgtatggctgtaccgtgtaatagtatcagtactggaatgcagtgtgaa atggatccagtatcccagacagaggcttgtgagaagataatgatgaaggagtacaatgtaataggctggtaccattccca tcctgcattcctacctaacccctctgtacgggacatagaaactcagctcaaattccag |
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Protein
| Protein ID | pfu_aug1.0_33775.1_70101.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33775.1_70101.t1 AKGDTDTEDLLLTDSCLHTLASKPRELNPNSVNSPKSPSQNNRNSVLSRQNASPKVATKNVKNMMNQKTVSSVSTLSRSV KKEAAFDPISEVLASVTTAQPTITTLRPSSAAVSMTLTQSIGQVSNSSLLAQLRSQVQQSKVNVLNSVDKVFDPSGDIVL ASHASLNTFPDQKIVKTHSKKNSKPEILETMEIKWNLHKQSLDVEEDKKKLQLSPTLENKLASSTGIIENLDRFCAVADI ITEGEDLEDDEEIDIENEDDVEENPVLQNRSASPNSVKKCQPSYLNKTSVRPGLKNCGDVNVIGRIHAYLECTGVINFGC EQCCYNNPSRPPSSGPRDRLPKENVQICMAKLESMRPRKRRIKDAYGQWIDEKEAQGKTIEHIEGAEETDDSIKQKVARH TKSNYDPFKLIPCLKFSEEKKAPFNVEVYNSALITMDLHAHVSKTEVIGLLGGVFCDKSHTLEVRMAVPCNSISTGMQCE MDPVSQTEACEKIMMKEYNVIGWYHSHPAFLPNPSVRDIETQLKFQ |
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