Gene
| Gene Model ID | pfu_aug1.0_3381.1_01441 |
|---|---|
| Locus | scaffold3381.1 : 30 ... 52785 : - |
| To GenomeBrowser | scaffold3381.1:30..52785 |
| Genes list of scaffold | scaffold3381.1 |
| Synonym | pfu_aug2.0_1850.1_01866 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3381.1_01441.t1 | 3 | 1 | MIB_HERC2 | 325 | 378 | 3.7e-24 | 84.4 | 6.8e-13 | 3.4e-09 | 36.5 |
| pfu_aug1.0_3381.1_01441.t1 | 3 | 2 | MIB_HERC2 | 920 | 940 | 3.7e-24 | 84.4 | 2.1e-05 | 0.1 | 12.5 |
| pfu_aug1.0_3381.1_01441.t1 | 3 | 3 | MIB_HERC2 | 982 | 1041 | 3.7e-24 | 84.4 | 1.0e-13 | 5.0e-10 | 39.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3381.1_01441.t1 | gi|260834995|ref|XP_002612495.1| | hypothetical protein BRAFLDRAFT_120990 [Branchiostoma floridae] | 2.0e-18 |
Transcript
| Transcript ID | pfu_aug1.0_3381.1_01441.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3381.1_01441.t1 atgcagtcgttaagcacacgctgccatacattgcacgaacgttactcacacgttgatgcacaattacatactaacttgca agtacttgaggaacgcgaagaaaagcgaggtaacaaacttgtggatctagaaggaaaagttattaatttaggcgaaaagg ttgaacatttgtgtagcattttacagagcaatcagcaagtaactaccgtccaaccgacagaagctgggcaaatacctatc cgaatcaaaaagctttctggtagtcaagctcaagcggcatctgagaatgatggtcagtcagtagcaaattcaggtaatgg caccagaaagtcacagcatgccaatagaaacaagagacatgatgtcgatgattatgatgaaaggggaaatgtaaaaaatg gagaatcaaagaaggctgctggttacaaaccgagtcttacagagaaactattgaaagaagagctgaaagaaagcagacag cgacaatttttacccttaaatgagtttggtctacgccataaagaaacagaaatggatgtggataacagagttagagttct atccaaagtacaatgcgtccctggagaagtaatgcaaggcaaaaccagaaaataccgtacccctctaacagaagataccc cgtccaaaaataacttaccaacacgtcaagaggtcttagcaatgaggaagctggggacaaagccaaaacaaaggacatct gcgagctctcaacatccaaaaagcagaaatgaattcaagaatttagcgggtctaatgagagatccagaggaagtccccga catcagagacatgaactcatggcgcaatatggcagaagctgaaagggtcagaggtttggtatcggatggacctaaggacg aacgtggtatggacacttgtttacttttggatatatcagagagtatggaaggagaggcatttgatgaaatgattaagatg gccctgcactacgtcaacggagataattggagatataaagaacaagatggcggagtgggcaatgttggaacagtcatcaa agtgaacaaggatgcaactgtcgtggtacgatggcccaacaaacagaaagcagtgtataagtacggaaaagacggatact ttgaagtgaagatatgttgtcgttttgcatgtagtgaaccgtcgaacgtttatgggaacccaggtaatcagaagacgcat gtatggggctctggacagcagcttggtgatggtacagaacaacaaccagacaccgcgagtaaagataaacctgaaccaga atctgaggataatctaaccatatcaccatctgtagatgaaatgaataaaaagaatacaagaaaagttgttattgcaatcg atgttcagtggagttatgaaaaagatgacatatggcatccctattccgatgacatcaaccttaaaatagagaaagccttc cagaggaaaagccagagatgcatcgtggaaatggacaatgaaataagtatcggaactacatgtgatcacgaaggttcaca ttcattaacattacaatgtcgatacatcaacatcttcatgtttcccattcacagattggacgctggaaatggcgatgaaa atgtaaaaagggcaaaggaaatcctgattaacttacaagcattagagaagcgtgatgaagatcgggaaagagcacttgag atacttcagaagaaaattaacttgttgcatgaaaaagttgaaacattaactagccaaaatggtcaaagtgcaaaacatgt aacaaagaaatcaggtcaaatgcgttacaagcaaatttcaaattatgattttggaattgatcctgaaagaacaagtgagt cagtagacgcaaaatcaagtcaagactcagaaaatgtttcacatctaaggacctggagcaagtccgaagaaacattatgt aaagatatagttgaaaatgttaaagattacgacttcattaagattcaacaatttttgacggcgactctgaagaaagacaa cattggattcaaattcaaagaaactgacagaagtgttgataatagggtcagactgctgtatagagagaaatgtgtacatg gtgaattgataaaagattccagatcacaacatctcgcacccaaaattataaacaatccaacagaaaataacctttccatt cttaaagaattccagccaatgaaagaaaacattggatgtgaatctaaaatgagaaataatcgttttgtactgaaaacaaa tgaaggtattgaggaagttgccacttctcttcctgtattcattgagaatataggaatagctacttttggacattacattg gagttgtgcaacacatgacaaatgattataaaaagatccaagatatactagatgggaaagctacgtctgatgttcacatt caaaaggatgctgacgatccactgtccaatagtactgagacattgaagataagtatggcactgcatgaaaccagctgtga tatcggtagacgtgacatacgggtctactgctatgccattggatgtgaaaacgataatattgcattgggtgttaaagaca acatacctgacctccagaatctagatgattccgccatgagagaagtgtgtcaagctttacacgtaggactattggattcc aaccgtgacatggatgaagtcatacatttgatcaaattctaccggaacaggacgaaaggtaccaatcaagatgacagtcg ttacttggaaatgaatgaccctgtcttaccaccgcttggtacgagagtaaggcgtggtccgaactggagctggggttacc aagactccgatggaccgggtcatctatgggttgagtgggacagcggtcatatgaacgtatataagtgtaatccgattttt ggctttgatgtgatgaccgttaatgaacctcgaatcctcagaggcgatgaattgatagctgttggatgtcttgttcaaag aggagcagactggagattcgatgatcaggatggaggcgacggtaacgtaggtgtggtaatcagggtagacaaaaatgcaa ccgtagtggtacgctggccgaacaagcaaaaggtagtctataagtacggaaacgacgggttctttgagataaaattatgc gatccctcaaaagtctatggtagtcaaggaaatctgaaaataaacacttcgggctcaggacaactatcaactgaggtgac catgcaaacaaatacgtccataaaggctacgaaaaagcaaccatccacgacggaaaagtcaaactccatatccttggtgt cgaaagatgacatgacaaaaagcatcagaaaagaaatcctgattaacttacaaatagtagcgaaacgggataaagatagg gaaaaatcacttcaaactctggaggagaaggtcaacaaattgtacgaaaaagttgaaactctcaatcaaacgcctcaaac tcgccaaagtgttaaacgcataagaaaaacattaagaaccaatgtgcaaaaaactgaatcagcacgcatgtgtttcgaaa cacctcctgattgtgatgcatcggtcgactctaaaaatggcataaaaactgaacagataaattcatgtcaagaaacaaca aagattcaatatattaagaaagagagtgaatcagaactgttcgatacttcgctctattgtgatccttcattcgactctga aattggtaaaacgactgttcagattaatccaagtcaagaagcaacaaagattcagtacgttagcaaaagttgtgagtcag aagacaatcagataaatacaagtcaagaagctacaaagatccaatatgttagcaaaaagaatgaatcagaagataatcaa aacgcagatgcttttgccctccctaaagaggttacagctcatacacagattaaaattgagcagtttttgacggagacgct gaagaaagacaatgttggtttccgattcaaagtaactgaaaggaatattgacaatcggataagaatggtgtacggagaga aaaatgcacccggaaaactgctgatggacactctggcaaaacatcagccggttgattctgctgatatgccgacgaaaaat gttttgcacagtggcaaagaagtttccttagttcaaaaactagggataatacctaaaacaaggatacgggatcaggatcc agtcttctctgatgaaatttggatagcgcccattattgagtccatcgtcaaggttggtcagtgtgcaatggtggaaaaag atgctgatagtcataactgtggctga |
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Protein
| Protein ID | pfu_aug1.0_3381.1_01441.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3381.1_01441.t1 MQSLSTRCHTLHERYSHVDAQLHTNLQVLEEREEKRGNKLVDLEGKVINLGEKVEHLCSILQSNQQVTTVQPTEAGQIPI RIKKLSGSQAQAASENDGQSVANSGNGTRKSQHANRNKRHDVDDYDERGNVKNGESKKAAGYKPSLTEKLLKEELKESRQ RQFLPLNEFGLRHKETEMDVDNRVRVLSKVQCVPGEVMQGKTRKYRTPLTEDTPSKNNLPTRQEVLAMRKLGTKPKQRTS ASSQHPKSRNEFKNLAGLMRDPEEVPDIRDMNSWRNMAEAERVRGLVSDGPKDERGMDTCLLLDISESMEGEAFDEMIKM ALHYVNGDNWRYKEQDGGVGNVGTVIKVNKDATVVVRWPNKQKAVYKYGKDGYFEVKICCRFACSEPSNVYGNPGNQKTH VWGSGQQLGDGTEQQPDTASKDKPEPESEDNLTISPSVDEMNKKNTRKVVIAIDVQWSYEKDDIWHPYSDDINLKIEKAF QRKSQRCIVEMDNEISIGTTCDHEGSHSLTLQCRYINIFMFPIHRLDAGNGDENVKRAKEILINLQALEKRDEDRERALE ILQKKINLLHEKVETLTSQNGQSAKHVTKKSGQMRYKQISNYDFGIDPERTSESVDAKSSQDSENVSHLRTWSKSEETLC KDIVENVKDYDFIKIQQFLTATLKKDNIGFKFKETDRSVDNRVRLLYREKCVHGELIKDSRSQHLAPKIINNPTENNLSI LKEFQPMKENIGCESKMRNNRFVLKTNEGIEEVATSLPVFIENIGIATFGHYIGVVQHMTNDYKKIQDILDGKATSDVHI QKDADDPLSNSTETLKISMALHETSCDIGRRDIRVYCYAIGCENDNIALGVKDNIPDLQNLDDSAMREVCQALHVGLLDS NRDMDEVIHLIKFYRNRTKGTNQDDSRYLEMNDPVLPPLGTRVRRGPNWSWGYQDSDGPGHLWVEWDSGHMNVYKCNPIF GFDVMTVNEPRILRGDELIAVGCLVQRGADWRFDDQDGGDGNVGVVIRVDKNATVVVRWPNKQKVVYKYGNDGFFEIKLC DPSKVYGSQGNLKINTSGSGQLSTEVTMQTNTSIKATKKQPSTTEKSNSISLVSKDDMTKSIRKEILINLQIVAKRDKDR EKSLQTLEEKVNKLYEKVETLNQTPQTRQSVKRIRKTLRTNVQKTESARMCFETPPDCDASVDSKNGIKTEQINSCQETT KIQYIKKESESELFDTSLYCDPSFDSEIGKTTVQINPSQEATKIQYVSKSCESEDNQINTSQEATKIQYVSKKNESEDNQ NADAFALPKEVTAHTQIKIEQFLTETLKKDNVGFRFKVTERNIDNRIRMVYGEKNAPGKLLMDTLAKHQPVDSADMPTKN VLHSGKEVSLVQKLGIIPKTRIRDQDPVFSDEIWIAPIIESIVKVGQCAMVEKDADSHNCG |
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