Gene
| Gene Model ID | pfu_aug1.0_3381.1_01443 |
|---|---|
| Locus | scaffold3381.1 : 80942 ... 83540 : - |
| To GenomeBrowser | scaffold3381.1:80942..83540 |
| Genes list of scaffold | scaffold3381.1 |
| Synonym | pfu_aug2.0_12035.1_19766 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3381.1_01443.t1 | 2 | 1 | MFS_1 | 1 | 294 | 1.3e-24 | 86.5 | 3.8e-27 | 1.1e-23 | 83.5 |
| pfu_aug1.0_3381.1_01443.t1 | 2 | 1 | Acatn | 43 | 86 | 8.2e-07 | 27.9 | 2.8e-10 | 8.2e-07 | 27.9 |
| pfu_aug1.0_3381.1_01443.t1 | 2 | 1 | OATP | 104 | 260 | 1.9e-09 | 36.1 | 1.3e-12 | 3.7e-09 | 35.1 |
| pfu_aug1.0_3381.1_01443.t1 | 2 | 2 | OATP | 271 | 336 | 1.9e-09 | 36.1 | 0.0079 | 23.0 | 2.8 |
| pfu_aug1.0_3381.1_01443.t1 | 2 | 2 | Acatn | 283 | 322 | 8.2e-07 | 27.9 | 0.42 | 1200.0 | -2.4 |
| pfu_aug1.0_3381.1_01443.t1 | 2 | 2 | MFS_1 | 314 | 353 | 1.3e-24 | 86.5 | 0.0002 | 0.59 | 8.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3381.1_01443.t1 | gi|260799991|ref|XP_002594920.1| | hypothetical protein BRAFLDRAFT_120006 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 2 |
| egg-Dshape | 1 |
| trochophore | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3381.1_01443.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3381.1_01443.t1 accattagtggacaaatatggaacaaaaagaaagtggctgtcatggagcatgctgggattgataatcacttgcattatgg gatcagtatccccaccagatcttctagcccagcttgcagtagtgctttttctgttcaatcttctgacttccactcaagat attgcagtggatggtatagcaatacaaattttatcgcattcagaattggcatatgggaacatagcccaggttgtagggta taaaatgggagcaatatttggagggggtgttttaacttggctcagtgactatttaagatggtcctatcttttcttgtgga taggtgtggtttatgggatatctcttgtagtgacaaacatgtttgtacctgctcaatacagaaaagaatcaaacaaatct gaagaaaaacaagaagacattggtgataaagaaacccatgaagagctgggtgagagaggtggaaagctgccatggtttat acaacactttattagaatatttcagacacctgggacaaagtggatggcagtgtatgtgctactatataagctaggtgagc aaggagccctgagtatggtgcccatgtttttgattgataaaggcatagctgcttcccaagtaggattttggacaggaatg gttggtcaagcagtgtccattgttggttcttttatgggtggaaccatcatctcacacttgagatggagcacgagggatct tctccaagtgttgagtattgtgaggatggttccattgttgattcagttttttgttgtatgttactggtcagaaagttcct catcatatttgtatgttttatctattatgagtatgtgtgccatgttacttgtaagtggaactgttactacggcaacattt acaatgatgatgcagtgttcccagatggcgccacaaagtatccaagcaacacattataccaatttagcaactttggaagt tttaggaaaattaacattctctgtgttcattggctatgtagtagacagtatgggatatcagtttatattcatggtgttta taattttaacagcaataatcattccgttgacacgaaattctccagttgcttttgatattaacaataaaaattcttga |
|
Protein
| Protein ID | pfu_aug1.0_3381.1_01443.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3381.1_01443.t1 PLVDKYGTKRKWLSWSMLGLIITCIMGSVSPPDLLAQLAVVLFLFNLLTSTQDIAVDGIAIQILSHSELAYGNIAQVVGY KMGAIFGGGVLTWLSDYLRWSYLFLWIGVVYGISLVVTNMFVPAQYRKESNKSEEKQEDIGDKETHEELGERGGKLPWFI QHFIRIFQTPGTKWMAVYVLLYKLGEQGALSMVPMFLIDKGIAASQVGFWTGMVGQAVSIVGSFMGGTIISHLRWSTRDL LQVLSIVRMVPLLIQFFVVCYWSESSSSYLYVLSIMSMCAMLLVSGTVTTATFTMMMQCSQMAPQSIQATHYTNLATLEV LGKLTFSVFIGYVVDSMGYQFIFMVFIILTAIIIPLTRNSPVAFDINNKNS |
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