Gene
| Gene Model ID | pfu_aug1.0_3393.1_23297 |
|---|---|
| Locus | scaffold3393.1 : 19466 ... 26272 : + |
| To GenomeBrowser | scaffold3393.1:19466..26272 |
| Genes list of scaffold | scaffold3393.1 |
| Synonym | pfu_aug2.0_799.1_31166 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-calcineurin B |
| Description | not 100% match with EU797511 (P. fucata). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3393.1_23297.t1 | 3 | 1 | EF-hand_1 | 14 | 23 | 1.2e-10 | 39.9 | 0.069 | 200.0 | 1.6 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 1 | EF-hand_8 | 14 | 22 | 8.2e-09 | 34.9 | 0.46 | 1400.0 | -1.0 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 1 | EF-hand_6 | 14 | 22 | 5.5e-08 | 32.0 | 0.13 | 390.0 | 1.3 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 1 | EF-hand_5 | 15 | 23 | 3.0e-08 | 32.6 | 0.047 | 140.0 | 2.0 |
| pfu_aug1.0_3393.1_23297.t1 | 1 | 1 | EF-hand_7 | 22 | 72 | 2.6e-09 | 37.0 | 1.8e-12 | 5.2e-09 | 36.1 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 2 | EF-hand_1 | 25 | 45 | 1.2e-10 | 39.9 | 3.5e-08 | 0.0001 | 21.3 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 2 | EF-hand_5 | 25 | 46 | 3.0e-08 | 32.6 | 2.7e-08 | 8.1e-05 | 21.7 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 2 | EF-hand_6 | 25 | 45 | 5.5e-08 | 32.0 | 4.7e-07 | 0.0014 | 18.3 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 2 | EF-hand_8 | 27 | 46 | 8.2e-09 | 34.9 | 2.7e-07 | 0.00081 | 18.9 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 3 | EF-hand_1 | 55 | 73 | 1.2e-10 | 39.9 | 4.7e-07 | 0.0014 | 17.7 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 3 | EF-hand_8 | 55 | 73 | 8.2e-09 | 34.9 | 1.8e-05 | 0.053 | 13.1 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 3 | EF-hand_6 | 57 | 73 | 5.5e-08 | 32.0 | 5.0e-05 | 0.15 | 12.0 |
| pfu_aug1.0_3393.1_23297.t1 | 3 | 3 | EF-hand_5 | 58 | 72 | 3.0e-08 | 32.6 | 7.8e-05 | 0.23 | 10.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3393.1_23297.t1 | gi|209921947|gb|ACI96107.1| | calcineurin B subunit [Pinctada fucata] | 3.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3393.1_23297.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3393.1_23297.t1 atgtacaatccgaataaccgtgacagccctatggcttggtacattgatgcagatgaaatcaaaaggctaggtaaaagatt tcgaaaattggatttagataattccggatctttgagtgtagacgaattcatgtccttaccagaattacaacagaatccac tggtgcaacgagtcatagatatatttgacacggacggtaacggggaagtagactttaaaggtaatcccttcaaccccccc cccccccaaatcaatagaaagaagaaatctgcacaaagcttctaa |
|
Protein
| Protein ID | pfu_aug1.0_3393.1_23297.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3393.1_23297.t1 MYNPNNRDSPMAWYIDADEIKRLGKRFRKLDLDNSGSLSVDEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKGNPFNPP PPQINRKKKSAQSF |
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