Gene
| Gene Model ID | pfu_aug1.0_33972.1_19513 |
|---|---|
| Locus | scaffold33972.1 : 1 ... 3930 : + |
| To GenomeBrowser | scaffold33972.1:1..3930 |
| Genes list of scaffold | scaffold33972.1 |
| Synonym | pfu_aug2.0_214.1_13802 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | nacrein A |
| Description | reciprocal BLASTN hit to NCBI Accession D83523 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_33972.1_19513.t1 | 2 | 1 | Collagen | 32 | 82 | 6.4e-16 | 57.6 | 1.6e-12 | 2.4e-08 | 33.4 |
| pfu_aug1.0_33972.1_19513.t1 | 2 | 2 | Collagen | 59 | 115 | 6.4e-16 | 57.6 | 1.4e-13 | 2.1e-09 | 36.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_33972.1_19513.t1 | gi|254810482|sp|A0ZSF6.1|MAC1_CRANI | Nacrein-like protein C1, partial [Crassostrea nippona] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_33972.1_19513.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33972.1_19513.t1 gtcggagatgacggctttggcgacgaaccggatgacgaagaatgtaaacacatcttaaagggacatcaccctgataataa cgagaacggcaatggagacaacggcaataacggctacaatggggacaacggtaacaatggtgacaacggcaataacggct acaatggggacaacggtaacaatggtgtcaacggcaataacggctacaatggggacaacggtaacaatggagacaacggc aataacggctacaatggggacaacggtaacaatggtgacaacggcaataacggtgaaaacggcaataacggtgaaaacgg caataacggtgaaaatggtcacaaacacggatgtcgggtaaagaaagcaaagcatctcagtaggatcctggaatgtgctt atagaaacgataaggtcagagagttcaagaaagttggagaagaggaaggttcttcatgcattacgaaatgttga |
|
Protein
| Protein ID | pfu_aug1.0_33972.1_19513.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_33972.1_19513.t1 VGDDGFGDEPDDEECKHILKGHHPDNNENGNGDNGNNGYNGDNGNNGDNGNNGYNGDNGNNGVNGNNGYNGDNGNNGDNG NNGYNGDNGNNGDNGNNGENGNNGENGNNGENGHKHGCRVKKAKHLSRILECAYRNDKVREFKKVGEEEGSSCITKC |
|