Gene
| Gene Model ID | pfu_aug1.0_3399.1_66669 |
|---|---|
| Locus | scaffold3399.1 : 10578 ... 24515 : - |
| To GenomeBrowser | scaffold3399.1:10578..24515 |
| Genes list of scaffold | scaffold3399.1 |
| Synonym | pfu_aug2.0_1103.1_11430 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3399.1_66669.t1 | 3 | 1 | RRM_1 | 134 | 207 | 7.4e-32 | 108.8 | 6.8e-09 | 1.1e-05 | 24.9 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 1 | RRM_6 | 134 | 208 | 5.2e-24 | 84.0 | 1.2e-13 | 2.0e-10 | 40.5 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 1 | RRM_5 | 169 | 209 | 4.8e-16 | 58.3 | 2.8e-07 | 0.00046 | 19.9 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 2 | RRM_1 | 244 | 313 | 7.4e-32 | 108.8 | 6.7e-18 | 1.1e-14 | 53.7 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 2 | RRM_6 | 244 | 312 | 5.2e-24 | 84.0 | 1.8e-09 | 2.9e-06 | 27.1 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 2 | RRM_5 | 259 | 316 | 4.8e-16 | 58.3 | 0.00013 | 0.22 | 11.4 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 3 | RRM_1 | 371 | 430 | 7.4e-32 | 108.8 | 3.9e-08 | 6.5e-05 | 22.4 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 3 | RRM_6 | 371 | 427 | 5.2e-24 | 84.0 | 6.5e-05 | 0.11 | 12.5 |
| pfu_aug1.0_3399.1_66669.t1 | 3 | 3 | RRM_5 | 374 | 428 | 4.8e-16 | 58.3 | 2.5e-08 | 4.1e-05 | 23.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3399.1_66669.t1 | gi|348510223|ref|XP_003442645.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3399.1_66669.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3399.1_66669.t1 atgagcaacgacctagattatcaagatttcgagcgacagcttgccgaaaacagagcagaatatgacaaagacagaagtgc aagtagtaggaaaagatcaaggtcaaggtcaaaaggaagaagatcaagaagtcgagacaggaagaggtcaaggtccaggg atagagacagaaaaaggagatccagaagtcgctctaaagaaaggagtagaggaaggagaaagaaagtatataaatattgg gatgttccaccacaaggatttgaacacatgacaccaatgcagtacaaggctatgcaaggagcaggtcagattccacaggc tatcacagtacccaatgtggcactcacaaacacaacagtgccgtttgccggcagtgccattagccggcaagctcgacggc tctatgttggcaacataccctttggagttacagaggaggccatgatggacttctttaatcatcaaatgaagttaactggg ttagcccaagccgagggaaatcctgtaatagcagtccaaattaatctggacaaaaactttgctttccttgagtttcgatc tgttgatgaaaccactcaagctatggcttttgatggtattaatttccaaggtcagtcactgaagataaggcgtccacgtg attaccaacctttaccaggcatggcagaaactccctccgtcaatgtaccaggagtggtgtccactgtcgtacaagactca atacataaaatctttatcggtggactacccaactaccttaatgaagatcaggtaaaagaactactgacttcatttgggcc tctgaaggcatttaatctggtcaaggacagcgctacgggtctatcaaagggctacgctttctgtgaatatgtagacccta gtgttacagatcagggctgtgctggtctgaatggtatgcagctgggagataagaagctgattgtacaaagagccagtgta ggagcaaaaaacatgcaagtgccggtacagctacagatcccaggactgaacctgaaccagggggcgggaccacccacaga agttctctgtctgatgaacatggtagtcccagaagaactagaggatgaagaggaatatgaagacatcctagaagacgtga aggaggagtgtggtaaatatggagttgtacgtagtatagaaataccccgacccataaaaggggtggaagtaccaggatgt ggaaagatatttgtggagttcaactctatcatagactgtcagaaggcccagcaggcactgacaggaagaaaattctccag ccgtgtagtcgtcacatcatattacgaccctgataaatatcacagaagagaattctaa |
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Protein
| Protein ID | pfu_aug1.0_3399.1_66669.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3399.1_66669.t1 MSNDLDYQDFERQLAENRAEYDKDRSASSRKRSRSRSKGRRSRSRDRKRSRSRDRDRKRRSRSRSKERSRGRRKKVYKYW DVPPQGFEHMTPMQYKAMQGAGQIPQAITVPNVALTNTTVPFAGSAISRQARRLYVGNIPFGVTEEAMMDFFNHQMKLTG LAQAEGNPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMAETPSVNVPGVVSTVVQDS IHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDPSVTDQGCAGLNGMQLGDKKLIVQRASV GAKNMQVPVQLQIPGLNLNQGAGPPTEVLCLMNMVVPEELEDEEEYEDILEDVKEECGKYGVVRSIEIPRPIKGVEVPGC GKIFVEFNSIIDCQKAQQALTGRKFSSRVVVTSYYDPDKYHRREF |
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