Gene
| Gene Model ID | pfu_aug1.0_3399.1_66670 |
|---|---|
| Locus | scaffold3399.1 : 28926 ... 48991 : + |
| To GenomeBrowser | scaffold3399.1:28926..48991 |
| Genes list of scaffold | scaffold3399.1 |
| Synonym | pfu_aug2.0_1103.1_11431 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3399.1_66670.t1 | 2 | 1 | Ribosomal_S2 | 108 | 202 | 1.19951e-42 | 145.5 | 8.3e-23 | 1.2e-18 | 67.0 |
| pfu_aug1.0_3399.1_66670.t1 | 2 | 2 | Ribosomal_S2 | 206 | 273 | 1.19951e-42 | 145.5 | 6.6e-26 | 9.9e-22 | 77.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3399.1_66670.t1 | gi|229891605|sp|A3RLT6.1|RSSA_PINFU | 40S ribosomal protein SA [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 3 |
| maleGonad | 1 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3399.1_66670.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3399.1_66670.t1 atggtggtggtggtggcggcggttgtggtagtggtggtggcggcggcggtgctgctgctgctgttgctgctggatattga aacattcgtcatcctgacgtattctggccccggggtggacgaaaacttaaacttaccccccccccccgacaatggaccct ctggatttgcctctgtacaatcaacaaaagaaactttgcaaactctttgtcttcaaatatacattttatccgaaagagcg atcgccgtaactcagatcgctgctaagatgtccggaggactagacgtgttagcgttgaaagaggaagatattaccaagtt tttggcatgtagtacacacttgggtgccaccaatgtggactttcagatggagcagtatgtttacaaacgtaaaccagacg gtgtatacatcatcaatctgaggaggacgtgggagaagctattactggcagcccgtgctattgcagccatagagaaccca gctgatgtgtgcgtcatctcagccagaccgtatggacaacgtgctgtactcaagtttgcttctgctactggtgccacacc cattgctggaaggttcacccctggaactttcaccaaccagatccaggctgctttccgtgagcctcgtctgttggttgtga ccgacccacgtatagatcatcaacctgtaactgaggcatcatacgtcaacatcccagttattgccctctgtaacaccgac tccccactcagatatgtggatgtagccattccatgcaacaacaagtctgtgcactctgttggtttgatgtggtggttgtt ggctcgtgaagtgcttcgcctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaaaaggcaacaagggtatctcaagactttg aaccaagatcaaaggctagcgccacagtgcacttgataagtaagatacagatcaagttgagttcagttttgattgaagtg tttaggtag |
|
Protein
| Protein ID | pfu_aug1.0_3399.1_66670.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3399.1_66670.t1 MVVVVAAVVVVVVAAAVLLLLLLLDIETFVILTYSGPGVDENLNLPPPPDNGPSGFASVQSTKETLQTLCLQIYILSERA IAVTQIAAKMSGGLDVLALKEEDITKFLACSTHLGATNVDFQMEQYVYKRKPDGVYIINLRRTWEKLLLAARAIAAIENP ADVCVISARPYGQRAVLKFASATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRIDHQPVTEASYVNIPVIALCNTD SPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKATRVSQDFEPRSKASATVHLISKIQIKLSSVLIEV FR |
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