Gene
| Gene Model ID | pfu_aug1.0_3434.1_23318 |
|---|---|
| Locus | scaffold3434.1 : 29966 ... 40015 : - |
| To GenomeBrowser | scaffold3434.1:29966..40015 |
| Genes list of scaffold | scaffold3434.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3434.1_23318.t1 | 1 | 1 | DUF1674 | 75 | 117 | 1.8e-18 | 66.4 | 2.3e-22 | 3.4e-18 | 65.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3434.1_23318.t1 | gi|56118809|ref|NP_001008179.1| | succinate dehydrogenase assembly factor 4, mitochondrial [Xenopus (Silurana) tropicalis] | 3.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3434.1_23318.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3434.1_23318.t1 atgaatataatttcagctgcaaggagctcagtccttaaattcaaaggcttaattccaagttttgctcaaatcaactcatc atgcagtagtatgattattccccaacgatggcattctgatgatggacatgacaaaaagccaaagagaaagaagggtaaaa ctccagctggaaaatttgatgacagtacagaactagagacagaggaagtagtgaacatgactgtggaacaggagcccctg gagaggtttcctgatgataaaaatcctctaacaggagaaataggtggacccagagggcctgaacccactagatatgggga ctgggaacgcaaggggagagtcacagacttctaa |
|
Protein
| Protein ID | pfu_aug1.0_3434.1_23318.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3434.1_23318.t1 MNIISAARSSVLKFKGLIPSFAQINSSCSSMIIPQRWHSDDGHDKKPKRKKGKTPAGKFDDSTELETEEVVNMTVEQEPL ERFPDDKNPLTGEIGGPRGPEPTRYGDWERKGRVTDF |
|