Gene
| Gene Model ID | pfu_aug1.0_344.1_29196 |
|---|---|
| Locus | scaffold344.1 : 43120 ... 83125 : - |
| To GenomeBrowser | scaffold344.1:43120..83125 |
| Genes list of scaffold | scaffold344.1 |
| Synonym | pfu_aug2.0_279.1_30551 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_344.1_29196.t1 | 1 | 1 | Kringle | 399 | 467 | 2.6e-14 | 53.0 | 2.0e-17 | 9.7e-14 | 51.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_344.1_29196.t1 | gi|260836042|ref|XP_002613016.1| | hypothetical protein BRAFLDRAFT_74801 [Branchiostoma floridae] | 3.0e-12 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_344.1_29196.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_344.1_29196.t1 atgcagaactctcgctgcgtgcggtctcgatcagtgcgttctacggattcaccaagaagcaagatacgcacgttgtctaa tatcgatacatgtatgtcatatggcatattagttgttggaaagtgtaaccttgaccagctgaccattcaggagaactttg accttgacagggatgcccagtataatgaaattcaaccaggttattacgagcatcatactggatcgcaagattccttctta aagatccactacactgattaccattatgctgtggtggatatttgtcttggttctacatatgatcgtcactgtaaccgttc ggaagaggaagtggaagtctggtcacatgacacaaatccagttcctacggcagtcgaggctcacctaaaaaatatcatcg agactgatctgtgtgttaactacagggaaatggtggaagctactccaggtttatgtgccgtacccgcaccacatcatgat tacatgaaggtgcactacacagattaccactacgctgttgtagaaatgtgctatggagatgatcacatgacctgctcgca gaatcaggtagagatctggtcacgtgatcgtgatgacatccccgttttaacggaaacagctttagaggacatggtgtcag gcaatctatgtgtacctccaagtgaactacacaaactcgtaacaggaagcagatgtaatttggatcgcatcaaaacacag gcagacttccagatcaagatgttccttggacgctggtattcgagatacgccattgattacacaggtagatctacaaatat gcatcatctgaagcgtacattctcattagacgatcaaggcatcctccatggtgtgatactaggtgaaatggacggtaaat gtgtacatcgacaagatgttaaattttatcctcagggagacggtgtgtacttcagacccgcaacgaaagaagatccaaat tctggttatatccgtgtgcacttcactgattacacgtacgccatcctggacgtgtgtttcggtaactatactgaccatca ctgtgatcgagaccatgaagtggtagagatcttgtcccgtcaccaggaccctgtacctgaacagatgttaaatctccttg acaacattctagacagcaatatgtgcatcaagctggacgacatgaagcatcttaatccagttgactgcttcacacctgga acggactactttggacctcacaacacaacggagaatggacgtgcttgtcagagatgggatgcggcaacgccccacaaaca taactacggtcactattacttggccatggacaattattgtcgaacatttgatcattctgtaccctggtgttacactatgg acccaacacatcgatgggaaaactgctcagtacctctttgtcgtgactgtaatggaaccacccttaaagcagaatataca aggtgtgaattcgtgcatgcacaagctcactttgacgagagtaagtttgagggtgtgtggcacatggtttcctccaccag ctacaactgggaaggtgctgtcttcacctccagctccatgagaatcaaatttgacgagaacggcaccatgcatacagctt ctgcagctttagaatcgggagctacagactgtaccaaggtctcggaatataaatcctaccgtgtcgaaccaggagtatac agccatacaaatggactacacacttttgtggaggtctcctacaccgattatgagtatgccattgtatattcctgctttgg agaagacccctcagaccatcgctgtaagaaagggcatgagagtatttctatatggtcccgacacaccactgccatacctg agacggagagacaccacctggacgctatcgtcagcagagattattgtattcctctcgtagacatgcatgacatggttcaa gtaagtaatntgtattttcgaaaaagaccgaatttgagtaatggtactcaaatgctcattgcatatacaattcattgtac tataagagtgtctgctttgaaggtaatgaatattatttctatttcagggtcatgtgacataccagaaataaatctcggaa actgtgatctggacaacctctctatacaggaacatttcaacctaacagcatttttgggagaatggcacttgcgttccgat acacggctaatttccaacgacaagccatggcagtccctaaccacacgctggtctgtagatagccaaggacaacttcacgt tgcttacgccggaatcttggagttagacacgtgtgtacaggtgaaggatacactatacaccgagttatcggcacccggac attataaacaccacacagaggctgagaattcctacatcaagattcactacactgactatcacttcgcgatcgtggatatc tgcttcggtaaatccgacgagcatcactgtgacaagacgtcggaggaagttcagatcctgtcccgtgacaccaatccaat acccaagacaaggatgcacttactgaaggccgtagctagcggagatctctgtattaattttgacgacttccataatgtta caacaggactatgccaggtacctgcaccacatgtagttcaatggatattggcatag |
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Protein
| Protein ID | pfu_aug1.0_344.1_29196.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_344.1_29196.t1 MQNSRCVRSRSVRSTDSPRSKIRTLSNIDTCMSYGILVVGKCNLDQLTIQENFDLDRDAQYNEIQPGYYEHHTGSQDSFL KIHYTDYHYAVVDICLGSTYDRHCNRSEEEVEVWSHDTNPVPTAVEAHLKNIIETDLCVNYREMVEATPGLCAVPAPHHD YMKVHYTDYHYAVVEMCYGDDHMTCSQNQVEIWSRDRDDIPVLTETALEDMVSGNLCVPPSELHKLVTGSRCNLDRIKTQ ADFQIKMFLGRWYSRYAIDYTGRSTNMHHLKRTFSLDDQGILHGVILGEMDGKCVHRQDVKFYPQGDGVYFRPATKEDPN SGYIRVHFTDYTYAILDVCFGNYTDHHCDRDHEVVEILSRHQDPVPEQMLNLLDNILDSNMCIKLDDMKHLNPVDCFTPG TDYFGPHNTTENGRACQRWDAATPHKHNYGHYYLAMDNYCRTFDHSVPWCYTMDPTHRWENCSVPLCRDCNGTTLKAEYT RCEFVHAQAHFDESKFEGVWHMVSSTSYNWEGAVFTSSSMRIKFDENGTMHTASAALESGATDCTKVSEYKSYRVEPGVY SHTNGLHTFVEVSYTDYEYAIVYSCFGEDPSDHRCKKGHESISIWSRHTTAIPETERHHLDAIVSRDYCIPLVDMHDMVQ VSNXYFRKRPNLSNGTQMLIAYTIHCTIRVSALKVMNIISISGSCDIPEINLGNCDLDNLSIQEHFNLTAFLGEWHLRSD TRLISNDKPWQSLTTRWSVDSQGQLHVAYAGILELDTCVQVKDTLYTELSAPGHYKHHTEAENSYIKIHYTDYHFAIVDI CFGKSDEHHCDKTSEEVQILSRDTNPIPKTRMHLLKAVASGDLCINFDDFHNVTTGLCQVPAPHVVQWILA |
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