Gene
| Gene Model ID | pfu_aug1.0_345.1_58084 |
|---|---|
| Locus | scaffold345.1 : 68036 ... 80846 : + |
| To GenomeBrowser | scaffold345.1:68036..80846 |
| Genes list of scaffold | scaffold345.1 |
| Synonym | pfu_aug2.0_824.1_14587 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_345.1_58084.t1 | 2 | 1 | AXH | 321 | 390 | 5.19999e-40 | 136.1 | 5.7e-19 | 2.8e-15 | 56.4 |
| pfu_aug1.0_345.1_58084.t1 | 2 | 2 | AXH | 415 | 465 | 5.19999e-40 | 136.1 | 5.6e-26 | 2.8e-22 | 79.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_345.1_58084.t1 | gi|334358891|ref|NP_001186234.1| | ataxin-1 isoform a [Mus musculus] | 5.00264e-43 |
Transcript
| Transcript ID | pfu_aug1.0_345.1_58084.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_345.1_58084.t1 atgttagcttccgccgcgtcgcccggtggaatgccgggagttttccgtccccctatgacgttgtccgatgcctcagctag acttctctcaggcggtagtagtcagttcccaacgttatactcggcacctggaaaccgaggcagtagttctcagctttcgc cgtacctaggcggacacgatgcctcgaccgggcagagcgcgcacctttcaccacactacagcgccttttacacgtcacag tatcctaactacccgagccgggcgttactgacaaatcctaattacccgcacatcgagtcttactcggccgtactgcagag tatgggaagtcaagttcaacaatcctctcatacacagctacctcgtaatacgtacggacatgtgtcacagtattccctta tgggaacatctcatcagagatccatgtcagcctcggtgtccccaagtcccgaggttgcctcgcatcatgcgcccgcgaac cccgggaattccatcgtgggacacggggaggcaattccgtctgatctcaaatcacgaattgatattagggagagaaaact ccacgaacaagaatatttatctcacattaaggaggagagaactcacagtctttcagcgattgaactctcgggaggaaaat ccgtttcttttaaggaccctccccacagggatttagtttctacaaaagattctaactataaagtgcctagtgggaaggaa ggtagtttgaagcacaggattttaacccgcccctctgatagtgcaatacaaagctctatggtggattctcgttactcatc ctacgcatcgcaacaaatatcagacgaaccatccgctaaacgatcaaagtacagtacgagtagcgcggcaccctccaaat ccacacattccgcggaagtggcgagtggaaatattagttctgctgcttcgccgcaatctcagctacattaccctccacat ttcatgaaaggatctataattcagttaacaaacggtgaattaaaacgtgtagaggaccttcaaactgaggattttgtaca aagtgctgaaattagtgatgatctcaaaatagactccagtactgtggtgaaaatagaagagagtgtggacagagggactg ccatactaggcttcgtagtaggagaacacaaagtccagggggagaaaaagattgagttaaactgtattgaaatagtgtat ttgcaaaatgaatttatcttcgatatttataatctatatccattacaggtgacagtagaagcgacgttggagcacccgtt ctttgtgtttggccagggctggtcatcgtgtgagccggacaggactttacagcgttatggactagaatgtcagaggttgt ctgtgggtgacgtctgtatctcactgacgcataaagacgtcaccgcccacgctgccgaaatatcccaacaacaacgccag ctacagctgaaaaatcaacaaagtccgcaccaagtgccctccccttcttctaaccctgcctcacagaggtcaccgaagga ttctcaaggtcaaggacattcagtgcctagccctaataatagatcagggaattccccatttccaactcaggatcactacg atgctgtcaatcgacctccacgtaaacgtaactggtcatcatctagcttacatgaaaacgagagtggtaatggtatttgg gctcatggcaagtgctaccaatag |
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Protein
| Protein ID | pfu_aug1.0_345.1_58084.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_345.1_58084.t1 MLASAASPGGMPGVFRPPMTLSDASARLLSGGSSQFPTLYSAPGNRGSSSQLSPYLGGHDASTGQSAHLSPHYSAFYTSQ YPNYPSRALLTNPNYPHIESYSAVLQSMGSQVQQSSHTQLPRNTYGHVSQYSLMGTSHQRSMSASVSPSPEVASHHAPAN PGNSIVGHGEAIPSDLKSRIDIRERKLHEQEYLSHIKEERTHSLSAIELSGGKSVSFKDPPHRDLVSTKDSNYKVPSGKE GSLKHRILTRPSDSAIQSSMVDSRYSSYASQQISDEPSAKRSKYSTSSAAPSKSTHSAEVASGNISSAASPQSQLHYPPH FMKGSIIQLTNGELKRVEDLQTEDFVQSAEISDDLKIDSSTVVKIEESVDRGTAILGFVVGEHKVQGEKKIELNCIEIVY LQNEFIFDIYNLYPLQVTVEATLEHPFFVFGQGWSSCEPDRTLQRYGLECQRLSVGDVCISLTHKDVTAHAAEISQQQRQ LQLKNQQSPHQVPSPSSNPASQRSPKDSQGQGHSVPSPNNRSGNSPFPTQDHYDAVNRPPRKRNWSSSSLHENESGNGIW AHGKCYQ |
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