Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_3454.1_08626
Locus scaffold3454.1 : 51019 ... 63885 : -
To GenomeBrowser scaffold3454.1:51019..63885
Genes list of scaffold scaffold3454.1
Synonym pfu_aug2.0_451.1_04190

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_3454.1_08626.t1 16 1 zf-C2H2_jaz 62 75 9.1e-27 92.5 0.055 67.0 3.7
pfu_aug1.0_3454.1_08626.t1 15 1 zf-H2C2_2 201 222 0.0 326.6 1.3e-11 1.7e-08 34.3
pfu_aug1.0_3454.1_08626.t1 14 1 zf-C2H2_6 211 222 7.6e-27 92.3 0.0052 6.4 6.8
pfu_aug1.0_3454.1_08626.t1 16 1 zf-met 212 230 4.0e-22 77.6 0.0012 1.5 9.1
pfu_aug1.0_3454.1_08626.t1 15 1 zf-C2H2 212 231 0.0 177.5 1.4e-05 0.017 15.4
pfu_aug1.0_3454.1_08626.t1 15 1 zf-C2H2_4 212 234 4.1e-37 123.7 0.00042 0.52 10.7
pfu_aug1.0_3454.1_08626.t1 16 2 zf-C2H2_jaz 214 230 9.1e-27 92.5 0.062 76.0 3.6
pfu_aug1.0_3454.1_08626.t1 15 2 zf-H2C2_2 227 251 0.0 326.6 1.6e-08 2.0e-05 24.6
pfu_aug1.0_3454.1_08626.t1 16 3 zf-C2H2_jaz 240 262 9.1e-27 92.5 5.0e-05 0.061 13.4
pfu_aug1.0_3454.1_08626.t1 16 2 zf-met 240 259 4.0e-22 77.6 0.51 630.0 0.8
pfu_aug1.0_3454.1_08626.t1 15 2 zf-C2H2 240 262 0.0 177.5 1.3e-05 0.016 15.5
pfu_aug1.0_3454.1_08626.t1 15 2 zf-C2H2_4 240 262 4.1e-37 123.7 0.00031 0.39 11.1
pfu_aug1.0_3454.1_08626.t1 14 2 zf-C2H2_6 240 262 7.6e-27 92.3 2.8e-05 0.034 14.0
pfu_aug1.0_3454.1_08626.t1 15 3 zf-H2C2_2 257 278 0.0 326.6 9.2e-12 1.1e-08 34.8
pfu_aug1.0_3454.1_08626.t1 14 3 zf-C2H2_6 267 284 7.6e-27 92.3 0.0016 2.0 8.4
pfu_aug1.0_3454.1_08626.t1 16 4 zf-C2H2_jaz 268 287 9.1e-27 92.5 0.00012 0.15 12.2
pfu_aug1.0_3454.1_08626.t1 16 3 zf-met 268 288 4.0e-22 77.6 0.00018 0.23 11.7
pfu_aug1.0_3454.1_08626.t1 15 3 zf-C2H2 268 290 0.0 177.5 8.4e-07 0.001 19.2
pfu_aug1.0_3454.1_08626.t1 15 3 zf-C2H2_4 268 290 4.1e-37 123.7 0.00018 0.22 11.9
pfu_aug1.0_3454.1_08626.t1 15 4 zf-H2C2_2 285 307 0.0 326.6 3.6e-10 4.5e-07 29.8
pfu_aug1.0_3454.1_08626.t1 14 4 zf-C2H2_6 295 316 7.6e-27 92.3 3.0e-06 0.0038 17.0
pfu_aug1.0_3454.1_08626.t1 16 5 zf-C2H2_jaz 296 315 9.1e-27 92.5 9.6e-05 0.12 12.5
pfu_aug1.0_3454.1_08626.t1 16 4 zf-met 296 315 4.0e-22 77.6 6.9e-05 0.085 13.0
pfu_aug1.0_3454.1_08626.t1 15 4 zf-C2H2 296 318 0.0 177.5 8.7e-07 0.0011 19.2
pfu_aug1.0_3454.1_08626.t1 15 4 zf-C2H2_4 296 318 4.1e-37 123.7 2.1e-05 0.027 14.8
pfu_aug1.0_3454.1_08626.t1 16 5 zf-met 317 328 4.0e-22 77.6 0.069 86.0 3.5
pfu_aug1.0_3454.1_08626.t1 15 5 zf-H2C2_2 344 355 0.0 326.6 0.0033 4.1 7.8
pfu_aug1.0_3454.1_08626.t1 16 6 zf-C2H2_jaz 345 366 9.1e-27 92.5 0.00023 0.28 11.3
pfu_aug1.0_3454.1_08626.t1 15 5 zf-C2H2 345 367 0.0 177.5 1.8e-05 0.022 15.0
pfu_aug1.0_3454.1_08626.t1 15 5 zf-C2H2_4 345 367 4.1e-37 123.7 4.4e-06 0.0054 16.9
pfu_aug1.0_3454.1_08626.t1 14 5 zf-C2H2_6 345 368 7.6e-27 92.3 4.9e-06 0.0061 16.4
pfu_aug1.0_3454.1_08626.t1 16 6 zf-met 346 364 4.0e-22 77.6 0.00096 1.2 9.4
pfu_aug1.0_3454.1_08626.t1 15 6 zf-H2C2_2 360 384 0.0 326.6 2.7e-07 0.00033 20.7
pfu_aug1.0_3454.1_08626.t1 14 6 zf-C2H2_6 372 384 7.6e-27 92.3 0.22 270.0 1.6
pfu_aug1.0_3454.1_08626.t1 16 7 zf-met 373 393 4.0e-22 77.6 0.00016 0.2 11.8
pfu_aug1.0_3454.1_08626.t1 15 6 zf-C2H2 373 395 0.0 177.5 7.8e-08 9.6e-05 22.5
pfu_aug1.0_3454.1_08626.t1 15 6 zf-C2H2_4 373 395 4.1e-37 123.7 1.1e-05 0.014 15.7
pfu_aug1.0_3454.1_08626.t1 16 7 zf-C2H2_jaz 375 395 9.1e-27 92.5 0.054 67.0 3.7
pfu_aug1.0_3454.1_08626.t1 15 7 zf-H2C2_2 388 411 0.0 326.6 1.1e-11 1.3e-08 34.6
pfu_aug1.0_3454.1_08626.t1 16 8 zf-met 401 421 4.0e-22 77.6 0.0019 2.4 8.5
pfu_aug1.0_3454.1_08626.t1 15 7 zf-C2H2 401 423 0.0 177.5 1.9e-07 0.00023 21.3
pfu_aug1.0_3454.1_08626.t1 15 7 zf-C2H2_4 401 423 4.1e-37 123.7 0.00014 0.17 12.3
pfu_aug1.0_3454.1_08626.t1 14 7 zf-C2H2_6 401 423 7.6e-27 92.3 0.00058 0.72 9.8
pfu_aug1.0_3454.1_08626.t1 16 8 zf-C2H2_jaz 403 423 9.1e-27 92.5 0.021 26.0 5.1
pfu_aug1.0_3454.1_08626.t1 15 8 zf-H2C2_2 415 440 0.0 326.6 2.5e-11 3.1e-08 33.5
pfu_aug1.0_3454.1_08626.t1 16 9 zf-C2H2_jaz 429 448 9.1e-27 92.5 1.1e-06 0.0014 18.7
pfu_aug1.0_3454.1_08626.t1 16 9 zf-met 429 449 4.0e-22 77.6 0.00086 1.1 9.6
pfu_aug1.0_3454.1_08626.t1 15 8 zf-C2H2 429 451 0.0 177.5 0.0019 2.4 8.6
pfu_aug1.0_3454.1_08626.t1 15 8 zf-C2H2_4 429 449 4.1e-37 123.7 0.00032 0.39 11.1
pfu_aug1.0_3454.1_08626.t1 14 8 zf-C2H2_6 429 439 7.6e-27 92.3 0.0037 4.5 7.3
pfu_aug1.0_3454.1_08626.t1 15 9 zf-H2C2_2 444 467 0.0 326.6 0.00019 0.23 11.8
pfu_aug1.0_3454.1_08626.t1 15 9 zf-C2H2 457 478 0.0 177.5 8.4e-08 0.0001 22.3
pfu_aug1.0_3454.1_08626.t1 15 9 zf-C2H2_4 457 478 4.1e-37 123.7 1.0e-07 0.00013 22.0
pfu_aug1.0_3454.1_08626.t1 16 10 zf-C2H2_jaz 458 476 9.1e-27 92.5 0.0006 0.74 10.0
pfu_aug1.0_3454.1_08626.t1 16 10 zf-met 458 476 4.0e-22 77.6 4.1e-05 0.05 13.8
pfu_aug1.0_3454.1_08626.t1 14 9 zf-C2H2_6 458 467 7.6e-27 92.3 0.0062 7.6 6.5
pfu_aug1.0_3454.1_08626.t1 15 10 zf-H2C2_2 472 494 0.0 326.6 4.6e-11 5.7e-08 32.6
pfu_aug1.0_3454.1_08626.t1 14 10 zf-C2H2_6 483 506 7.6e-27 92.3 1.9e-05 0.024 14.5
pfu_aug1.0_3454.1_08626.t1 16 11 zf-met 484 502 4.0e-22 77.6 0.039 49.0 4.3
pfu_aug1.0_3454.1_08626.t1 15 10 zf-C2H2 484 506 0.0 177.5 5.4e-06 0.0066 16.7
pfu_aug1.0_3454.1_08626.t1 15 10 zf-C2H2_4 484 506 4.1e-37 123.7 0.0037 4.6 7.8
pfu_aug1.0_3454.1_08626.t1 16 11 zf-C2H2_jaz 486 503 9.1e-27 92.5 0.085 100.0 3.1
pfu_aug1.0_3454.1_08626.t1 15 11 zf-H2C2_2 498 522 0.0 326.6 3.1e-10 3.9e-07 30.0
pfu_aug1.0_3454.1_08626.t1 14 11 zf-C2H2_6 512 534 7.6e-27 92.3 0.00074 0.91 9.5
pfu_aug1.0_3454.1_08626.t1 16 12 zf-C2H2_jaz 512 532 9.1e-27 92.5 2.0e-06 0.0025 17.8
pfu_aug1.0_3454.1_08626.t1 16 12 zf-met 512 532 4.0e-22 77.6 0.00061 0.75 10.0
pfu_aug1.0_3454.1_08626.t1 15 11 zf-C2H2 512 534 0.0 177.5 6.5e-08 8.0e-05 22.7
pfu_aug1.0_3454.1_08626.t1 15 11 zf-C2H2_4 512 534 4.1e-37 123.7 1.7e-05 0.021 15.1
pfu_aug1.0_3454.1_08626.t1 15 12 zf-H2C2_2 527 550 0.0 326.6 5.3e-10 6.6e-07 29.3
pfu_aug1.0_3454.1_08626.t1 16 13 zf-C2H2_jaz 540 560 9.1e-27 92.5 0.00032 0.4 10.8
pfu_aug1.0_3454.1_08626.t1 16 13 zf-met 540 558 4.0e-22 77.6 0.00089 1.1 9.5
pfu_aug1.0_3454.1_08626.t1 15 12 zf-C2H2 540 562 0.0 177.5 4.2e-07 0.00052 20.1
pfu_aug1.0_3454.1_08626.t1 15 12 zf-C2H2_4 540 562 4.1e-37 123.7 1.4e-06 0.0017 18.5
pfu_aug1.0_3454.1_08626.t1 14 12 zf-C2H2_6 541 562 7.6e-27 92.3 0.00063 0.78 9.7
pfu_aug1.0_3454.1_08626.t1 15 13 zf-H2C2_2 554 579 0.0 326.6 4.8e-10 5.9e-07 29.4
pfu_aug1.0_3454.1_08626.t1 14 13 zf-C2H2_6 567 591 7.6e-27 92.3 2.3e-05 0.028 14.3
pfu_aug1.0_3454.1_08626.t1 16 14 zf-C2H2_jaz 568 588 9.1e-27 92.5 0.00013 0.16 12.1
pfu_aug1.0_3454.1_08626.t1 16 14 zf-met 568 588 4.0e-22 77.6 3.4e-05 0.042 14.0
pfu_aug1.0_3454.1_08626.t1 15 13 zf-C2H2 568 590 0.0 177.5 1.3e-07 0.00015 21.8
pfu_aug1.0_3454.1_08626.t1 15 13 zf-C2H2_4 568 590 4.1e-37 123.7 4.3e-05 0.053 13.8
pfu_aug1.0_3454.1_08626.t1 15 14 zf-H2C2_2 583 606 0.0 326.6 2.7e-10 3.4e-07 30.2
pfu_aug1.0_3454.1_08626.t1 16 15 zf-C2H2_jaz 596 621 9.1e-27 92.5 0.00015 0.19 11.9
pfu_aug1.0_3454.1_08626.t1 16 15 zf-met 596 620 4.0e-22 77.6 0.02 25.0 5.2
pfu_aug1.0_3454.1_08626.t1 15 14 zf-C2H2 596 618 0.0 177.5 0.024 29.0 5.2
pfu_aug1.0_3454.1_08626.t1 15 14 zf-C2H2_4 597 618 4.1e-37 123.7 0.04 50.0 4.5
pfu_aug1.0_3454.1_08626.t1 15 15 zf-H2C2_2 611 642 0.0 326.6 0.018 23.0 5.5
pfu_aug1.0_3454.1_08626.t1 14 14 zf-C2H2_6 631 651 7.6e-27 92.3 2.4e-05 0.03 14.2
pfu_aug1.0_3454.1_08626.t1 16 16 zf-C2H2_jaz 632 651 9.1e-27 92.5 0.56 690.0 0.5
pfu_aug1.0_3454.1_08626.t1 16 16 zf-met 632 651 4.0e-22 77.6 0.0029 3.6 7.9
pfu_aug1.0_3454.1_08626.t1 15 15 zf-C2H2 632 654 0.0 177.5 0.00027 0.33 11.3
pfu_aug1.0_3454.1_08626.t1 15 15 zf-C2H2_4 632 654 4.1e-37 123.7 0.0033 4.1 7.9

Transcript
Transcript IDpfu_aug1.0_3454.1_08626.t1
Definition- 
>pfu_aug1.0_3454.1_08626.t1
atgtcggtccgaatggtcgtgcgttccacagagtgtaaggatatttttcctcacaataatccttacgatttcagaattca
agtaaacaaaggactccgtttcaatggaaattggacgattgatttgatagaattcggcatagacagagtggagaaaaatg
gatttcaaaatgaaatatttgtgtatgcagatatttgtgacatgtcatacattaaccagaaccagaccccactgttgcga
cgtgtttacatcacaaaaacaggaaacctggagtttcagaacacttgtcccgtgcctttgcgtttaactggctgtaaaaa
cagtgagcctcatgatggaattaggaacgacaagagtgtgttaaatgcccattggctgcaagaatgcaagctaaatctgg
aggataaccataatcctgcattcaacatggaggaggaggaggtgggcatcgttataaagagtgaaataggcaatcatgac
ttgtgtgaacgtgagggaaatttgatgaatggaactgatattgaagccttagacctttcactgcataaaaagaataattt
ttctgttagtgaacttaacggcaatgaggatgaagaaaaaacgcacctacgaaaacatacgggagagaaaccttatcagt
gcggcttgtgtgataaagcattttcagaaaaaaagtatttgcttatgcatcagtgggtacatataggagataagcccttt
aagtgtgacgaatgcggtcgaagctttttaaacgaacacaaacttatttctcacagaaggactcacactggcgagaagcc
gtataaatgtgatatttgcgacaagaggtttgccgagaaatcttacataaaagctcacaaaagagtacatacaggcgaaa
agccttacgaatgcaatttctgtcaaaggagattttcatctaaatctaatctgttgaaacataaagctgtttgcaaggta
aagtttacgaacagtagtatacttctttcagataaaaattcaaaaactgaagaaagaagcgcggacggcaagtatttgtg
tgatttttgcgaaaagtcgtttacggaaaaaaacgaacttcgggcacataagaaagaacattatatagagaaaacttttc
aatgcacaatgtgcgacaaaaaatttgtaagttgggcgtatttgtggaagcatataaaaacacattctggagaaagacct
tatcagtgcaatacttgtaataaaaggtttgttcgaaagacgaatctaatgcatcatctaagtacacacacaggagagaa
gccgttcaaatgcaaattttgtgacaaatggttcgcacacaagaagggtctcgacgtacacgaacaattgcatgcaggac
atcaagtgccatgtccagtctgcgggaaaacgttcgctagcaagacttacgtgcggaaacacatgaagattcacagcgga
gaaaaaccttatcaatgtgacgtttgcgaaaatagattttcacgaagatttgcccttgaagaacatcggaggttacacac
aggagacaagccattttcgtgtgaatattgcgaccggacgtttgcccaacgatcaactctaagggaacatctcaaactac
atacaggacaacaattttatgcgtgcgatttgtgcgataaaaaattttcccagcgacgcagcttaacggtacaccaaaaa
gttcatacaggagagaacctttttacatgtgaagtatgcgataaaggtttcggatataaatcaacacttagggtacacat
gaaagtacattctggagaaaaaccgttcaagtgttttccgtgtaataaaagttttgcacggaagtgcggttttgaaaagc
acaagacaacacacaaacataagaaagcatttgcaggagagatgcttatagtttataattgcgatatttgtttaattaaa
ttttcagattattctgactttatgttacaccagaatgaccatgaaagaaaccaagagggaagctttacattatcaagtaa
aaaccaatctcagatgacgctagttccggaaacagagataagtgaagtaataaaaccagaggattgctttgaacatgaca
taagcaatgaagatgatgaagaactaaactctgatgatgaagaatcagtttctgaacatggggaagaacaaagtcctgaa
catggggaagaaccaatttctgaacaagatgaagaattaatttctgaagatgaagaaataatttctgaaggtgatgaaga
atatatttctgaacttggagtagaatcagtttctgaacgtcataaagaaccaatagctgaacataaaagtgagtcatttg
ctgaacatgatgaagaacctgtctctgagctcggtgaagaacctatttctgaacatgaggaagaacctttttctgagctt
ggtgaagaacctatttctgagcttggtaaagaacctatttctgaacatgaagaagatcccccttctacagatgatgaaga
acctatttctgatcatgaacatgatgaacaatcaatttctgaactgactgaatgtgtgaaaagtgagtgttaa

Protein
Protein IDpfu_aug1.0_3454.1_08626.t1
Definition- 
>pfu_aug1.0_3454.1_08626.t1
MSVRMVVRSTECKDIFPHNNPYDFRIQVNKGLRFNGNWTIDLIEFGIDRVEKNGFQNEIFVYADICDMSYINQNQTPLLR
RVYITKTGNLEFQNTCPVPLRLTGCKNSEPHDGIRNDKSVLNAHWLQECKLNLEDNHNPAFNMEEEEVGIVIKSEIGNHD
LCEREGNLMNGTDIEALDLSLHKKNNFSVSELNGNEDEEKTHLRKHTGEKPYQCGLCDKAFSEKKYLLMHQWVHIGDKPF
KCDECGRSFLNEHKLISHRRTHTGEKPYKCDICDKRFAEKSYIKAHKRVHTGEKPYECNFCQRRFSSKSNLLKHKAVCKV
KFTNSSILLSDKNSKTEERSADGKYLCDFCEKSFTEKNELRAHKKEHYIEKTFQCTMCDKKFVSWAYLWKHIKTHSGERP
YQCNTCNKRFVRKTNLMHHLSTHTGEKPFKCKFCDKWFAHKKGLDVHEQLHAGHQVPCPVCGKTFASKTYVRKHMKIHSG
EKPYQCDVCENRFSRRFALEEHRRLHTGDKPFSCEYCDRTFAQRSTLREHLKLHTGQQFYACDLCDKKFSQRRSLTVHQK
VHTGENLFTCEVCDKGFGYKSTLRVHMKVHSGEKPFKCFPCNKSFARKCGFEKHKTTHKHKKAFAGEMLIVYNCDICLIK
FSDYSDFMLHQNDHERNQEGSFTLSSKNQSQMTLVPETEISEVIKPEDCFEHDISNEDDEELNSDDEESVSEHGEEQSPE
HGEEPISEQDEELISEDEEIISEGDEEYISELGVESVSERHKEPIAEHKSESFAEHDEEPVSELGEEPISEHEEEPFSEL
GEEPISELGKEPISEHEEDPPSTDDEEPISDHEHDEQSISELTECVKSEC

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495