Gene
| Gene Model ID | pfu_aug1.0_3465.1_01465 |
|---|---|
| Locus | scaffold3465.1 : 71149 ... 75085 : - |
| To GenomeBrowser | scaffold3465.1:71149..75085 |
| Genes list of scaffold | scaffold3465.1 |
| Synonym | pfu_aug2.0_2856.1_22207 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-pearl |
| Description | Best hit to Adi-pearl with 5e-09 by a BLASTP search against Acropora digitifera protein database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3465.1_01465.t1 | 1 | 1 | HLH | 34 | 69 | 4.5e-08 | 32.6 | 2.1e-11 | 1.0e-07 | 31.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3465.1_01465.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3465.1_01465.t1 atgaagatggtacaaatgaagtcaaagttatcaagaaggcagtccccgactcagagtgttgccaaaaagcatttgaaaat gcatctgaagagaatcagaaatcgagagtattcccgacttagggatatggtaccttctattgcaacgaaagacaaagttt caaaggttacagtgattgaagaggcagtgaagtatatagacgaattacacaaagctctgttcgaaagacttcaaagcaaa ggtctgcagaacgcaccgtcaagtgaagatgacgttaaagactttattcagaacatgatgccgccaaatttgttcagtag aacggactctactccatgtcaatttgagaaacaacagagagttccttcctacttgttacagagaaagcataaaggatcga gtaaataa |
|
Protein
| Protein ID | pfu_aug1.0_3465.1_01465.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3465.1_01465.t1 MKMVQMKSKLSRRQSPTQSVAKKHLKMHLKRIRNREYSRLRDMVPSIATKDKVSKVTVIEEAVKYIDELHKALFERLQSK GLQNAPSSEDDVKDFIQNMMPPNLFSRTDSTPCQFEKQQRVPSYLLQRKHKGSSK |
|