Gene
| Gene Model ID | pfu_aug1.0_3468.1_59249 |
|---|---|
| Locus | scaffold3468.1 : 4766 ... 20494 : + |
| To GenomeBrowser | scaffold3468.1:4766..20494 |
| Genes list of scaffold | scaffold3468.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3468.1_59249.t1 | 2 | 1 | Ldl_recept_a | 2 | 30 | 2.3e-17 | 62.6 | 5.4e-13 | 8.9e-10 | 38.3 |
| pfu_aug1.0_3468.1_59249.t1 | 2 | 2 | Ldl_recept_a | 38 | 74 | 2.3e-17 | 62.6 | 1.3e-11 | 2.1e-08 | 33.9 |
| pfu_aug1.0_3468.1_59249.t1 | 2 | 1 | Ig_3 | 38 | 62 | 1.8e-09 | 37.9 | 0.58 | 960.0 | 0.4 |
| pfu_aug1.0_3468.1_59249.t1 | 2 | 2 | Ig_3 | 76 | 154 | 1.8e-09 | 37.9 | 6.1e-12 | 1.0e-08 | 35.5 |
| pfu_aug1.0_3468.1_59249.t1 | 1 | 1 | Ig_2 | 80 | 158 | 7.8e-08 | 32.3 | 1.4e-10 | 2.3e-07 | 30.8 |
| pfu_aug1.0_3468.1_59249.t1 | 1 | 1 | I-set | 83 | 158 | 6.3e-12 | 45.1 | 8.5e-15 | 1.4e-11 | 44.0 |
| pfu_aug1.0_3468.1_59249.t1 | 2 | 1 | Laminin_B | 263 | 384 | 1.5e-34 | 118.5 | 3.6e-23 | 6.0e-20 | 71.2 |
| pfu_aug1.0_3468.1_59249.t1 | 2 | 1 | Laminin_EGF | 432 | 466 | 5.3e-11 | 42.2 | 2.8e-08 | 4.7e-05 | 23.2 |
| pfu_aug1.0_3468.1_59249.t1 | 2 | 2 | Laminin_EGF | 473 | 519 | 5.3e-11 | 42.2 | 1.7e-11 | 2.8e-08 | 33.5 |
| pfu_aug1.0_3468.1_59249.t1 | 2 | 2 | Laminin_B | 590 | 671 | 1.5e-34 | 118.5 | 5.1e-15 | 8.4e-12 | 44.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3468.1_59249.t1 | gi|328783869|ref|XP_393220.4| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_3468.1_59249.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3468.1_59249.t1 atgaaatgtaacaatggtcgctgtgttatgaagttctggagatgtgacggggataatgattgtggtgacggatcggatga actcaactgtggcactcgtaagcctacagatccctgtaatcctgacgaattccagtgtaccaccattaaccaatgtgtac cggcatcgtaccactgtgacaacgagattgactgtcaggataggtcggacgaaattggctgcgctccgcccattgtgaac attgccccgcctcccaatatagaagttgagataggaggagtattcaccattatctgcgaagctgtcggcacacccacccc tttgattgtctggcgtctcaactggggaaacataccaactggtgacagagtacatgtcagtagtataaacggacgaggaa atctaacaatcgaggatgcacgtctctctgattctggcgcatatacttgtgaggctattaatgtacgaggaagtattttc gcttccccagatgccattatcatcgtcagacgtttaccaaatggaatctgtgagccacccttcttcaatgtagaagcttc tgtgacgtcagaatgtgtgagatgcttctgtttcggccacactgaccagtgttatagctctgacctacagatctcaagga ttaacttgattggagagatgaagatgatcaacttcgacaccaaagtatctatagatactcgttacgttgagaggctaccc tcaggtgaatactcgggattttaccaggtcggggacggcttaagactcattcctcaaggaatttactactggagcctgcc acgagagttcctgggtgacaggctaacaagttatggaggagacttaaagtacgacatttactacgccgtcgggaggggcg tgtcacaggccgtcgaccaaccagatattatcatttctggcaatggtgtaacactgtaccacaggacgactaccatactg agacccgatggtagagtcaccgttaccgctccactagtaccgagtgcctggactaaatcagacggacctaaacgagggga cactccagttgtccagttagctactagagaagaactgatgatggtcctggagaatctggaatacatttatatacgatcac aatatgacagggaccaagctttaacaaggattgtgcccctgggtacaggcgtgtccaacaaggtagttatctggggatct gtacacgatgtaactgtaacggtcattcctcggactgtgatcctgttacctcggaatgtagggttcagccctacatgtat actggatcgggatgggcagcccacttgtacagcttgcccacaaggttatgagggcagacgttgtgaacgttgtgctgtgg ggtacaaaggtgatcccaccaagccaggggactactgtacacaattgggagattattgtgactcaagaggaagccttgac cagagacccgaccctctcactcagcaatgtacttgtaagttaaacgtccaaggcaggacctgcgatgagtgtaaacctaa caccttctaccttgacatcaataatccctatggatgcataaagtgtttctgtatgggtgtgactaatagatgtctcagca cgtcatggaacagggcacagatcagttcctcctttacaagagaccgtcaagaattcacactgaccgatacgcttggccga cagtctgtgaccagtggttttactataaatagtaacttaagggagctgatctatcgtaactttaacaaccttgaggacgc tgtttattactggaatttaccatctaaattcttaggagacaaggtgatgtcatatggaggtagtttacggtttgtactgt tatacagaccaggacgggacagctcctcacaaaccctggatgcaccactggtagaaatcaagggtaacagtataacattg atgcaccgtgctagacaaaccccggcagcaaacacgcctgttcccaacaacgtcaaattctatgagtacaaaatggatta ttcagaaaatcataaacggaaggcgtag |
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Protein
| Protein ID | pfu_aug1.0_3468.1_59249.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3468.1_59249.t1 MKCNNGRCVMKFWRCDGDNDCGDGSDELNCGTRKPTDPCNPDEFQCTTINQCVPASYHCDNEIDCQDRSDEIGCAPPIVN IAPPPNIEVEIGGVFTIICEAVGTPTPLIVWRLNWGNIPTGDRVHVSSINGRGNLTIEDARLSDSGAYTCEAINVRGSIF ASPDAIIIVRRLPNGICEPPFFNVEASVTSECVRCFCFGHTDQCYSSDLQISRINLIGEMKMINFDTKVSIDTRYVERLP SGEYSGFYQVGDGLRLIPQGIYYWSLPREFLGDRLTSYGGDLKYDIYYAVGRGVSQAVDQPDIIISGNGVTLYHRTTTIL RPDGRVTVTAPLVPSAWTKSDGPKRGDTPVVQLATREELMMVLENLEYIYIRSQYDRDQALTRIVPLGTGVSNKVVIWGS VHDVTVTVIPRTVILLPRNVGFSPTCILDRDGQPTCTACPQGYEGRRCERCAVGYKGDPTKPGDYCTQLGDYCDSRGSLD QRPDPLTQQCTCKLNVQGRTCDECKPNTFYLDINNPYGCIKCFCMGVTNRCLSTSWNRAQISSSFTRDRQEFTLTDTLGR QSVTSGFTINSNLRELIYRNFNNLEDAVYYWNLPSKFLGDKVMSYGGSLRFVLLYRPGRDSSSQTLDAPLVEIKGNSITL MHRARQTPAANTPVPNNVKFYEYKMDYSENHKRKA |
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