Gene
| Gene Model ID | pfu_aug1.0_3468.1_59250 |
|---|---|
| Locus | scaffold3468.1 : 22376 ... 46980 : + |
| To GenomeBrowser | scaffold3468.1:22376..46980 |
| Genes list of scaffold | scaffold3468.1 |
| Synonym | pfu_aug2.0_423.1_10758 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3468.1_59250.t1 | 7 | 1 | Ig_2 | 5 | 79 | 0.0 | 170.0 | 0.32 | 520.0 | 0.8 |
| pfu_aug1.0_3468.1_59250.t1 | 4 | 1 | Laminin_EGF | 39 | 63 | 3.7e-17 | 61.9 | 4.5e-05 | 0.074 | 13.0 |
| pfu_aug1.0_3468.1_59250.t1 | 1 | 1 | Laminin_B | 137 | 273 | 1.2e-21 | 76.7 | 1.3e-24 | 2.1e-21 | 75.9 |
| pfu_aug1.0_3468.1_59250.t1 | 4 | 2 | Laminin_EGF | 274 | 300 | 3.7e-17 | 61.9 | 5.5e-07 | 0.00091 | 19.1 |
| pfu_aug1.0_3468.1_59250.t1 | 4 | 3 | Laminin_EGF | 308 | 355 | 3.7e-17 | 61.9 | 1.1e-13 | 1.7e-10 | 40.6 |
| pfu_aug1.0_3468.1_59250.t1 | 4 | 4 | Laminin_EGF | 358 | 415 | 3.7e-17 | 61.9 | 4.8e-05 | 0.079 | 12.9 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 1 | Ig_3 | 423 | 496 | 0.0 | 156.1 | 1.1e-12 | 1.8e-09 | 37.9 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 1 | I-set | 424 | 509 | 0.0 | 233.0 | 8.0e-19 | 1.3e-15 | 56.9 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 2 | Ig_2 | 424 | 508 | 0.0 | 170.0 | 7.8e-12 | 1.3e-08 | 34.8 |
| pfu_aug1.0_3468.1_59250.t1 | 5 | 1 | C2-set_2 | 424 | 475 | 1.1e-11 | 44.4 | 0.0033 | 5.4 | 6.9 |
| pfu_aug1.0_3468.1_59250.t1 | 6 | 1 | V-set | 432 | 496 | 4.1e-24 | 84.6 | 4.6e-08 | 7.5e-05 | 22.5 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 1 | ig | 438 | 494 | 5.2e-38 | 128.9 | 9.6e-11 | 1.6e-07 | 31.3 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 3 | Ig_2 | 520 | 603 | 0.0 | 170.0 | 6.9e-11 | 1.1e-07 | 31.8 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 2 | I-set | 521 | 603 | 0.0 | 233.0 | 1.0e-11 | 1.7e-08 | 34.2 |
| pfu_aug1.0_3468.1_59250.t1 | 6 | 2 | V-set | 522 | 593 | 4.1e-24 | 84.6 | 1.2e-06 | 0.002 | 17.9 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 2 | Ig_3 | 524 | 589 | 0.0 | 156.1 | 3.8e-07 | 0.00063 | 20.1 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 2 | ig | 531 | 587 | 5.2e-38 | 128.9 | 1.7e-07 | 0.00029 | 20.9 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 3 | Ig_3 | 610 | 680 | 0.0 | 156.1 | 4.1e-07 | 0.00068 | 20.0 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 3 | I-set | 612 | 692 | 0.0 | 233.0 | 2.3e-14 | 3.7e-11 | 42.7 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 4 | Ig_2 | 614 | 691 | 0.0 | 170.0 | 6.7e-11 | 1.1e-07 | 31.8 |
| pfu_aug1.0_3468.1_59250.t1 | 5 | 2 | C2-set_2 | 620 | 651 | 1.1e-11 | 44.4 | 0.00084 | 1.4 | 8.8 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 3 | ig | 624 | 678 | 5.2e-38 | 128.9 | 1.9e-05 | 0.031 | 14.3 |
| pfu_aug1.0_3468.1_59250.t1 | 6 | 3 | V-set | 641 | 680 | 4.1e-24 | 84.6 | 0.016 | 26.0 | 4.7 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 5 | Ig_2 | 706 | 786 | 0.0 | 170.0 | 4.8e-10 | 7.8e-07 | 29.1 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 4 | Ig_3 | 711 | 770 | 0.0 | 156.1 | 0.00016 | 0.27 | 11.7 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 4 | ig | 716 | 770 | 5.2e-38 | 128.9 | 6.3e-05 | 0.1 | 12.7 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 4 | I-set | 747 | 786 | 0.0 | 233.0 | 8.7e-05 | 0.14 | 11.9 |
| pfu_aug1.0_3468.1_59250.t1 | 6 | 4 | V-set | 747 | 786 | 4.1e-24 | 84.6 | 0.00022 | 0.36 | 10.7 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 5 | Ig_3 | 796 | 832 | 0.0 | 156.1 | 0.00037 | 0.61 | 10.6 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 5 | I-set | 805 | 833 | 0.0 | 233.0 | 3.0e-05 | 0.05 | 13.4 |
| pfu_aug1.0_3468.1_59250.t1 | 6 | 5 | V-set | 809 | 923 | 4.1e-24 | 84.6 | 2.1e-08 | 3.5e-05 | 23.6 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 5 | ig | 811 | 833 | 5.2e-38 | 128.9 | 0.0054 | 8.8 | 6.5 |
| pfu_aug1.0_3468.1_59250.t1 | 5 | 3 | C2-set_2 | 812 | 832 | 1.1e-11 | 44.4 | 0.0058 | 9.6 | 6.1 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 6 | Ig_3 | 834 | 913 | 0.0 | 156.1 | 1.9e-15 | 3.2e-12 | 46.7 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 6 | Ig_2 | 836 | 926 | 0.0 | 170.0 | 9.7e-09 | 1.6e-05 | 24.9 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 6 | I-set | 839 | 926 | 0.0 | 233.0 | 7.9e-17 | 1.3e-13 | 50.5 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 6 | ig | 847 | 911 | 5.2e-38 | 128.9 | 1.0e-08 | 1.7e-05 | 24.8 |
| pfu_aug1.0_3468.1_59250.t1 | 5 | 4 | C2-set_2 | 847 | 898 | 1.1e-11 | 44.4 | 0.00058 | 0.95 | 9.4 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 7 | Ig_3 | 927 | 975 | 0.0 | 156.1 | 5.9e-07 | 0.00097 | 19.5 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 7 | Ig_2 | 935 | 974 | 0.0 | 170.0 | 1.1e-07 | 0.00019 | 21.5 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 7 | I-set | 939 | 974 | 0.0 | 233.0 | 1.3e-07 | 0.00021 | 21.0 |
| pfu_aug1.0_3468.1_59250.t1 | 6 | 6 | V-set | 939 | 965 | 4.1e-24 | 84.6 | 0.18 | 290.0 | 1.3 |
| pfu_aug1.0_3468.1_59250.t1 | 5 | 5 | C2-set_2 | 939 | 986 | 1.1e-11 | 44.4 | 3.8e-05 | 0.063 | 13.1 |
| pfu_aug1.0_3468.1_59250.t1 | 7 | 7 | ig | 942 | 975 | 5.2e-38 | 128.9 | 2.4e-07 | 0.0004 | 20.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3468.1_59250.t1 | gi|297282427|ref|XP_001099299.2| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein [Macaca mulatta] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_3468.1_59250.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3468.1_59250.t1 atgtatcgtaaagcagattaccgtttatataaacaggaccagactgtcagtgtgatgccagaggtacggtaccgaacact caatgtgaccctgttagccgacagtgccaatgcacatgctcgaggattacgatgtagttcatgtgcggcaggatacttca atctggcttctgataattcccagggctgtttggaatgttactgctccggtgttaccgaccagtgctccagctctagctac tatagagatagggtataccccaatctgtccggctcagatacccataattttgtattgaccaatcgccgactgaccaacgt aatatctgatggattcactgtagacacagataggagagctattacgtttaacgcgttttccggagtacagagggagagag aaagccttttcttcagtctacctccaaagtttaggggcaatcaggtgacatcatacggaggacaattgaccttcactata gagacaaacgtagccttggatgctggacaaacgttcagggacgtagactttgaaatagtgaccagcggccagaggcagag gatgtactacctgtttaacccaccactccgaccgtttgagtcacgtacatacaccatcaagcttgtagagtcttcattcc gatcactggacggttctgaacccacacggaacaccttcatggcggtactgtccgacatagaagccatcttgatccgagcc acctaccacagcatcatgggaagtgcaaccctacgtgacctccacatggacacggctgtagctggcccaacgggctatgg ccgggccttggacgttgagagctgtcgttgcccacccggctatactggcttgtcttgtgagcagtgtgctgcgggcttcg tgagacaggattcaggggcgcggcagggagagtgtgttagatgtaattgtaatggacacgcttcgtcatgcgacactaca actggagaatgcttgaattgtcaacataacactgttggagatcgttgtgaaagatgtgccgatggtttctatggcgacgc cacatcaggaacacccaatgactgccgaccttgtccatgtcctcttactctaccgtccaatcgattctccactacttgcc acttggacaatgatggtcaagtgacctgtgatagatgtccgcccggctatcttggaagggactgtggaacatgtgacaca gccaatggttatactggaaatcctagagaagttggtggaaaatgtacaagggatacagtaattctacgaccaaggatcac cgtcaatccagtacgagtagaggaatctgtaggtcagaccattgttatacaatgtaacgttcgtggtccgggaccgttca acgtcgtatggagtagagagaatggccagcagctgtccagccggtcgcaggtcagtccgagttatacactgaccattaga aatctgatgaaatcggacgagggacggtacgtgtgtacggcaaccaacatacacggcagcaccagggagacagtatcagt cattgttataggagataaacagccaattagagtgagaatagaggaaccaaaagacgccacagtggacgaggggacgtcag ttagatttgtctgtgtagctacaggatctcttactcagatgacgtacattctatcatggacgagacaaggtggtcgtcta ccgtccaaggccatagataacaacggagtactagtaattccgaacgcccaggccgaagatcagggaacctacatttgtac aggctcagacatgatgtctaccgataccgcagtagcaacactcacagttagcagaagtgaaaccgcacccatcgtacgca tcgagccacgttaccagacagtgaaggaaggagagctagtagaattccgatgtatcgccaatgggcgtcccacccctgtt gtagaatggcgtagaagttctggtaggattaatccacaagctaccatcagtaatggagttctacgcattccgtttgcctt acgatcggatgaagctcagtatttctgtaaagccacaaatgtcgctggaacgaatgaagtcagaaccattctttatgtaa cagaaggagatatccgtccggacgtaacggtaattattcgacaaacatccgtaattgccgtgattggatccaccacacag ctcgtatgttacgtagatgacgactctctccgtgcaactttggtgtggtcacgtgttggagggctcccgacaggctccag ccaggataacggagtgctgactctcaacaacatacagccatcatacgctggtcgatacgtgtgtacggctatcacgtcag atggagataggggtaccggcacagccacggtcactgtacagcaaaatactataaggcgcgagttgcctaaggttgacctg taccctgaggggactcagaccattagtgtaggaggcagcgccttgttccaatgtcgagtgatgggcggagatcctccccc gacagttgtatggaccaggattgtaataacgccccgcaccaccgtgtacgccttagtcggacagcgtgtcgaagtagaat gcgtcggtgaaggtgaccccatacccactgtatactggagatatgaccaaggaccacaacgtggtgaccttccgtcaaca gacgtacaatctttcgatcgtagacaaggctcgagcaccctgaccatagagagcgtgacaacgtcagatactggaaacta tgtctgtgttgctgaaaatacggcaggaaccacggaggaaaatgtccaaattattgtaccacccactgtgatagcctcag agagaagtaagaggcccacaacaggagaactggttgaactacgctgtgatgcccgtggaagcccctcccccacagtcaca tgggaaaaagagggtggagccttgccatctaactctgacattagaaatggaatattaacaacgagtgaaaaatttgagaa attccatgacatcacgatgcaatttcattgtttgaccgaggttcgaagcttgtttgtctga |
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Protein
| Protein ID | pfu_aug1.0_3468.1_59250.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3468.1_59250.t1 MYRKADYRLYKQDQTVSVMPEVRYRTLNVTLLADSANAHARGLRCSSCAAGYFNLASDNSQGCLECYCSGVTDQCSSSSY YRDRVYPNLSGSDTHNFVLTNRRLTNVISDGFTVDTDRRAITFNAFSGVQRERESLFFSLPPKFRGNQVTSYGGQLTFTI ETNVALDAGQTFRDVDFEIVTSGQRQRMYYLFNPPLRPFESRTYTIKLVESSFRSLDGSEPTRNTFMAVLSDIEAILIRA TYHSIMGSATLRDLHMDTAVAGPTGYGRALDVESCRCPPGYTGLSCEQCAAGFVRQDSGARQGECVRCNCNGHASSCDTT TGECLNCQHNTVGDRCERCADGFYGDATSGTPNDCRPCPCPLTLPSNRFSTTCHLDNDGQVTCDRCPPGYLGRDCGTCDT ANGYTGNPREVGGKCTRDTVILRPRITVNPVRVEESVGQTIVIQCNVRGPGPFNVVWSRENGQQLSSRSQVSPSYTLTIR NLMKSDEGRYVCTATNIHGSTRETVSVIVIGDKQPIRVRIEEPKDATVDEGTSVRFVCVATGSLTQMTYILSWTRQGGRL PSKAIDNNGVLVIPNAQAEDQGTYICTGSDMMSTDTAVATLTVSRSETAPIVRIEPRYQTVKEGELVEFRCIANGRPTPV VEWRRSSGRINPQATISNGVLRIPFALRSDEAQYFCKATNVAGTNEVRTILYVTEGDIRPDVTVIIRQTSVIAVIGSTTQ LVCYVDDDSLRATLVWSRVGGLPTGSSQDNGVLTLNNIQPSYAGRYVCTAITSDGDRGTGTATVTVQQNTIRRELPKVDL YPEGTQTISVGGSALFQCRVMGGDPPPTVVWTRIVITPRTTVYALVGQRVEVECVGEGDPIPTVYWRYDQGPQRGDLPST DVQSFDRRQGSSTLTIESVTTSDTGNYVCVAENTAGTTEENVQIIVPPTVIASERSKRPTTGELVELRCDARGSPSPTVT WEKEGGALPSNSDIRNGILTTSEKFEKFHDITMQFHCLTEVRSLFV |
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