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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_3472.1_37607
Locus scaffold3472.1 : 31406 ... 40545 : +
To GenomeBrowser scaffold3472.1:31406..40545
Genes list of scaffold scaffold3472.1
Synonym pfu_aug2.0_1218.1_28132

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_3472.1_37607.t1 1 1 XPG_I 1 54 2.1e-10 40.4 1.2e-13 5.7e-10 39.1
pfu_aug1.0_3472.1_37607.t1 1 1 5_3_exonuc 41 100 5.6e-08 32.9 1.9e-11 9.6e-08 32.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_3472.1_37607.t1 gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
egg-4cell 1
>Adult tissues
maleGonad 1
mantle 1

Transcript
Transcript IDpfu_aug1.0_3472.1_37607.t1
Definition-
>pfu_aug1.0_3472.1_37607.t1
atggatgccctcacctttggtacaaatgtacttctacgacatctcactgttagtgaggcaaggaaactacccataaaaga
attcagctacaacagagtactggatgagttaggtgtagataaagaccagtttatagatttgtgcattttacttgggtgcg
attattgtgattcgattcgaggcataggaccgaaacgagcgtatgatttgatcaaacagcataagaacattgaggaaatt
ctcaaacacttagactcaaagatgtctaataattattaccatgatatcattgaaggagaaactccctatgatagcattaa
agtctttactacatgtaaatgtctctatatgatttacagtgaagaaaggatacgtaatggagtaaagaaattacttaaag
ccaagcagggaactacacaaggacgtctggattctttcttctcagtggtatcgacacattcatcgacaaaaagaaagcaa
gacgagcagaaagggtctgcaaagaagaaggcaaaggggggtggattcaaacgaccaaaataa

Protein
Protein IDpfu_aug1.0_3472.1_37607.t1
Definition-
>pfu_aug1.0_3472.1_37607.t1
MDALTFGTNVLLRHLTVSEARKLPIKEFSYNRVLDELGVDKDQFIDLCILLGCDYCDSIRGIGPKRAYDLIKQHKNIEEI
LKHLDSKMSNNYYHDIIEGETPYDSIKVFTTCKCLYMIYSEERIRNGVKKLLKAKQGTTQGRLDSFFSVVSTHSSTKRKQ
DEQKGSAKKKAKGGGFKRPK

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