Gene
| Gene Model ID | pfu_aug1.0_3498.1_37619 |
|---|---|
| Locus | scaffold3498.1 : 1 ... 30205 : - |
| To GenomeBrowser | scaffold3498.1:1..30205 |
| Genes list of scaffold | scaffold3498.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Trh-related1 |
| Description | Best hit to EHJ73300 trachealess [Danaus plexippus] with 3e-26 by BLASTP search against NCBI nr database. The predicted protein has a single PAS domain. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3498.1_37619.t1 | 1 | 1 | PAS | 93 | 159 | 1.1e-08 | 34.7 | 4.9e-12 | 1.8e-08 | 34.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3498.1_37619.t1 | gi|328712552|ref|XP_001949586.2| | 9.0e-24 |
Transcript
| Transcript ID | pfu_aug1.0_3498.1_37619.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3498.1_37619.t1 atgaatgtcggaactcgcttacggcgaagatccacaacttctatagaagtatttcttctttgtgatgcaaacgaaatcgt atatgatcacatgttattcggcacctctaagattatctccaaaaatgacatcaatggcacacactatgcttcacttctga cacagttacgggaaagtgttaaactgaagcgctgcggaagctcactagttaaagctaatgcagcaaacatgtatgacgtc acaattgccgttacagtcgaaaggcacgtgaaaatgttatcttacatcatagggtccctggatggttttgcgtttatttt agccaatgacggcagatttctgtacatatcagagacagtgtccatctacctagggctttcacaggtcgagatgaccggaa gtagtatatttgattacgtgcacgtgcaggaccattcggaattggtagaccagctaggcctgggtatatctcacggtgga tcatcaggagttccctcccctggttcccagtctgacgagggatcggctccatcgacgccccgatgtgtgactcccccaac tccagacagagtgctgtcctacgacactgatggtcacatgaacacatcactctttgacaaatgtgacgacttcaatttca gcatcacaaactttccttttatgagtagcgacatcccttcatcgcctgcttatggcgtgttcatatctcagttgatacgc tttgccagagcaagtaccaaatatacagattttattttgaaagataggcgtctttcagataagcttctcagtcagagata cgtttgtgaccgactaacatcgtcactgaggaagttctacgttcgatatggggaactcttcatacactatgatgtcccac tctccagaattgtggatgatattctgtcattgaccatttg |
|
Protein
| Protein ID | pfu_aug1.0_3498.1_37619.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3498.1_37619.t1 MNVGTRLRRRSTTSIEVFLLCDANEIVYDHMLFGTSKIISKNDINGTHYASLLTQLRESVKLKRCGSSLVKANAANMYDV TIAVTVERHVKMLSYIIGSLDGFAFILANDGRFLYISETVSIYLGLSQVEMTGSSIFDYVHVQDHSELVDQLGLGISHGG SSGVPSPGSQSDEGSAPSTPRCVTPPTPDRVLSYDTDGHMNTSLFDKCDDFNFSITNFPFMSSDIPSSPAYGVFISQLIR FARASTKYTDFILKDRRLSDKLLSQRYVCDRLTSSLRKFYVRYGELFIHYDVPLSRIVDDILSLTI |
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