Gene
Gene Model ID | pfu_aug1.0_35075.1_48180 |
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Locus | scaffold35075.1 : 1 ... 6494 : + |
To GenomeBrowser | scaffold35075.1:1..6494 |
Genes list of scaffold | scaffold35075.1 |
Synonym | pfu_aug2.0_8719.1_33018 |
Manual annotation
Study field | 20 basic cell biology |
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Gene name | ubiquitin |
Description | Identify to CAX79673.1| ubiquitin C [Schistosoma japonicum |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_35075.1_48180.t1 | 1 | 1 | ubiquitin | 1 | 58 | 2.1e-29 | 100.7 | 1.4e-32 | 4.0e-29 | 99.8 |
pfu_aug1.0_35075.1_48180.t1 | 2 | 1 | Rad60-SLD | 1 | 55 | 2.3e-14 | 52.8 | 2.5e-17 | 7.5e-14 | 51.1 |
pfu_aug1.0_35075.1_48180.t1 | 2 | 2 | Rad60-SLD | 85 | 101 | 2.3e-14 | 52.8 | 0.63 | 1900.0 | -1.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_35075.1_48180.t1 | gi|321468462|gb|EFX79447.1| | hypothetical protein DAPPUDRAFT_52566 [Daphnia pulex] | 5.60519e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 12 |
egg-4cell | 6 |
8-16cell | 3 |
egg-Dshape | 4 |
trochophore | 1 |
>Adult tissues | |
Dshape | 3 |
adductorMuscle | 1 |
maleGonad | 4 |
mantle | 2 |
mantleEdge | 1 |
mantlePallium | 2 |
pearlSac | 2 |
Transcript
Transcript ID | pfu_aug1.0_35075.1_48180.t1 |
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Definition | - |
>pfu_aug1.0_35075.1_48180.t1 gttgagccaagtgatactattgaaaatgtaaaggccaaaatacaggacaaagaaggaatccctcccgaccagcagaggtt gatttttgccggcaagcagttagaagacggccgtaccttgtcggactacaatatccagaaagagtctaccttacacttgg tgttacgtcttagaggaggtgccaagaaaaggaagaagaagaactacacaaccccaaagaagaacaagcacaagaagaag aaggtcaagctggctgtactgaaatactacaaggaacatatcaccaaccgaagcaccataggaagtcttatgacatcatc aagtgacgtcattttgacgttattgacaaaacacagtcaaaaaactgaaaatgtgtccttagcggagaatttcgatgtgg cctcaggtgtcgagaaacataaaacttttatgacaagaagatatattgattatctttcatttgttaatttttcatgtttc tcgatgcatgtggccaatgcaaatttgaaagaaacatgtaggttttgcagcaatttcacgtaa |
Protein
Protein ID | pfu_aug1.0_35075.1_48180.t1 |
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Definition | - |
>pfu_aug1.0_35075.1_48180.t1 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKNKHKKK KVKLAVLKYYKEHITNRSTIGSLMTSSSDVILTLLTKHSQKTENVSLAENFDVASGVEKHKTFMTRRYIDYLSFVNFSCF SMHVANANLKETCRFCSNFT |