Gene
| Gene Model ID | pfu_aug1.0_35075.1_48180 |
|---|---|
| Locus | scaffold35075.1 : 1 ... 6494 : + |
| To GenomeBrowser | scaffold35075.1:1..6494 |
| Genes list of scaffold | scaffold35075.1 |
| Synonym | pfu_aug2.0_8719.1_33018 |
Manual annotation
| Study field | 20 basic cell biology |
|---|---|
| Gene name | ubiquitin |
| Description | Identify to CAX79673.1| ubiquitin C [Schistosoma japonicum |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_35075.1_48180.t1 | 1 | 1 | ubiquitin | 1 | 58 | 2.1e-29 | 100.7 | 1.4e-32 | 4.0e-29 | 99.8 |
| pfu_aug1.0_35075.1_48180.t1 | 2 | 1 | Rad60-SLD | 1 | 55 | 2.3e-14 | 52.8 | 2.5e-17 | 7.5e-14 | 51.1 |
| pfu_aug1.0_35075.1_48180.t1 | 2 | 2 | Rad60-SLD | 85 | 101 | 2.3e-14 | 52.8 | 0.63 | 1900.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_35075.1_48180.t1 | gi|321468462|gb|EFX79447.1| | hypothetical protein DAPPUDRAFT_52566 [Daphnia pulex] | 5.60519e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 12 |
| egg-4cell | 6 |
| 8-16cell | 3 |
| egg-Dshape | 4 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 3 |
| adductorMuscle | 1 |
| maleGonad | 4 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 2 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_35075.1_48180.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_35075.1_48180.t1 gttgagccaagtgatactattgaaaatgtaaaggccaaaatacaggacaaagaaggaatccctcccgaccagcagaggtt gatttttgccggcaagcagttagaagacggccgtaccttgtcggactacaatatccagaaagagtctaccttacacttgg tgttacgtcttagaggaggtgccaagaaaaggaagaagaagaactacacaaccccaaagaagaacaagcacaagaagaag aaggtcaagctggctgtactgaaatactacaaggaacatatcaccaaccgaagcaccataggaagtcttatgacatcatc aagtgacgtcattttgacgttattgacaaaacacagtcaaaaaactgaaaatgtgtccttagcggagaatttcgatgtgg cctcaggtgtcgagaaacataaaacttttatgacaagaagatatattgattatctttcatttgttaatttttcatgtttc tcgatgcatgtggccaatgcaaatttgaaagaaacatgtaggttttgcagcaatttcacgtaa |
|
Protein
| Protein ID | pfu_aug1.0_35075.1_48180.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_35075.1_48180.t1 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKNKHKKK KVKLAVLKYYKEHITNRSTIGSLMTSSSDVILTLLTKHSQKTENVSLAENFDVASGVEKHKTFMTRRYIDYLSFVNFSCF SMHVANANLKETCRFCSNFT |
|