Gene
| Gene Model ID | pfu_aug1.0_3510.1_08639 |
|---|---|
| Locus | scaffold3510.1 : 51886 ... 63725 : - |
| To GenomeBrowser | scaffold3510.1:51886..63725 |
| Genes list of scaffold | scaffold3510.1 |
| Synonym | pfu_aug2.0_386.1_20709 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3510.1_08639.t1 | 2 | 1 | Steroid_dh | 31 | 51 | 6.1e-33 | 113.7 | 0.69 | 3400.0 | -2.4 |
| pfu_aug1.0_3510.1_08639.t1 | 2 | 2 | Steroid_dh | 60 | 213 | 6.1e-33 | 113.7 | 1.2e-36 | 6.1e-33 | 113.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3510.1_08639.t1 | gi|260815739|ref|XP_002602630.1| | hypothetical protein BRAFLDRAFT_123019 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_3510.1_08639.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3510.1_08639.t1 atgtctgggtccgcgtccctgccgcgtccggttaagaagtttggggtagctcagagtggcttggttcagaagtttggggt agcccagtatctgacaaacattgcctgtgcctgtttttcattccattacgtcaagagattgttggagaccatttttgtac atagattttctaatgcaactatgccagtaaggaacatattcaagaacagttcgtactactggggatttgcagcattcatc gcgtattacataaatcatcctctatacacagtgccagcttatggtgacatacagatttatggaggtcttgctggattctt gtttggagaactaggtaacttttccatccacatggcactcagaaatctaagaccaccaggtacaaaggagaggcgtattc cggttccgaccagcaacccaatgacaggtttatttagcctggtatcctgtcctaactacacgtacgaggcgatatcgtgg atcagcttcagcatcatgactcagtgtttaccagctgctctgttcaccacgtgtggattttatcaaatggccgtatgggc tctaggtaaacacagaaattacaaaaaggagttcaaggattacccaaggaaaaggaagagcattatacctttcttactgt aa |
|
Protein
| Protein ID | pfu_aug1.0_3510.1_08639.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3510.1_08639.t1 MSGSASLPRPVKKFGVAQSGLVQKFGVAQYLTNIACACFSFHYVKRLLETIFVHRFSNATMPVRNIFKNSSYYWGFAAFI AYYINHPLYTVPAYGDIQIYGGLAGFLFGELGNFSIHMALRNLRPPGTKERRIPVPTSNPMTGLFSLVSCPNYTYEAISW ISFSIMTQCLPAALFTTCGFYQMAVWALGKHRNYKKEFKDYPRKRKSIIPFLL |
|